PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT15381

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YB

Protein Properties

Length: 121aa MW: 13451.3 Da PI: 4.9566

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT15381	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	102.9	2.3e-32	23	101	1	93
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdrflPian++ imkk++ an+ki+kdaket++ ea dkcqrekrktin ddllwa+atlGfe+y+epl yl+kyre+ EMT15381 23 VREQDRFLPIANIGSIMKKAILANGKIAKDAKETLR------------EARDKCQREKRKTINVDDLLWAMATLGFEEYIEPL--YLQKYREV 101 69******************************97............79****************************8..9***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-28	22	102	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-22	26	103	IPR009072	Histone-fold
Pfam	PF00808	1.6E-6	29	60	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.7E-5	64	82	No hit	No description
PRINTS	PR00615	3.7E-5	83	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MSDVPASPPG GGGSGDGGDF GNVREQDRFL PIANIGSIMK KAILANGKIA KDAKETLREA 60 RDKCQREKRK TINVDDLLWA MATLGFEEYI EPLYLQKYRE VADFGLAKIQ HEDDTTMCLC 120 W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-28	18	100	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009078	1e-43	BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBank	KJ862214	1e-43	KJ862214.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit B2 mRNA, complete cds.
GenBank	KM078735	1e-43	KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBank	KM078736	1e-43	KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBank	KM078737	1e-43	KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150941.1	1e-45	nuclear transcription factor Y subunit B-like
Swissprot	P25209	3e-39	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	N1QWE7	5e-85	N1QWE7_AEGTA; Nuclear transcription factor Y subunit B
STRING	EMT15381	8e-86	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-39	nuclear factor Y, subunit B3

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471]