PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-other
Protein Properties Length: 54aa    MW: 6593.65 Da    PI: 10.1163
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15300genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-19353757
              --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
              ++++q+++Le+ F+ + yp++ +r++L ++lg++ +q+k+WF+NrRa++++
  EMT15300  3 ISDNQIQILERTFKVCLYPDEIQRADLGRELGVQPQQIKFWFKNRRAQMRR 53
              6899*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.694154IPR001356Homeobox domain
PfamPF000461.2E-16353IPR001356Homeobox domain
CDDcd000861.48E-12353No hitNo description
SMARTSM003891.8E-5354IPR001356Homeobox domain
SuperFamilySSF466891.23E-16353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-18453IPR009057Homeodomain-like
PRINTSPR000314.2E-52534IPR000047Helix-turn-helix motif
PRINTSPR000314.2E-53450IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MDISDNQIQI LERTFKVCLY PDEIQRADLG RELGVQPQQI KFWFKNRRAQ MRRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967008.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_020980110.12e-15homeobox-leucine zipper protein HDG11-like isoform X1
RefseqXP_020980112.12e-15homeobox-leucine zipper protein HDG11-like isoform X2
RefseqXP_020980113.12e-15homeobox-leucine zipper protein HDG11-like isoform X2
RefseqXP_020980114.12e-15homeobox-leucine zipper protein HDG11-like isoform X2
RefseqXP_025655491.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_025701434.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_029149194.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_029149195.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_029154366.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_029154367.12e-15homeobox-leucine zipper protein HDG11
RefseqXP_029154368.12e-15homeobox-leucine zipper protein HDG11
SwissprotQ69T584e-16ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLR7W9471e-31R7W947_AEGTA; Homeobox-leucine zipper protein ROC8
STRINGEMT153002e-32(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3702333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-17homeodomain GLABROUS 11