PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15082
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 332aa    MW: 34855.1 Da    PI: 6.9802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15082genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0757103245
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 
                      g WT e  + + +a ++   g     W++Ia  +g g+t++++k ++ 
         EMT15082  57 GGWTWEQNKAFENALALVDLGegeaVWNKIADAVG-GKTAEEIKRHYE 103
                      56*************99888888************.**********95 PP
2Myb_DNA-binding38.62.5e-12168211447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
         EMT15082 168 WTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 211
                      *****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.64554110IPR017884SANT domain
SMARTSM007170.006955108IPR001005SANT/Myb domain
PfamPF002492.0E-557103IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-958113IPR009057Homeodomain-like
CDDcd001676.96E-659106No hitNo description
PROSITE profilePS5129415.914160216IPR017930Myb domain
SuperFamilySSF466893.88E-16163217IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-17164214IPR006447Myb domain, plants
SMARTSM007173.0E-10164214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10167210IPR009057Homeodomain-like
CDDcd001675.06E-10168212No hitNo description
PfamPF002498.1E-11168211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVTEEGSRFG SGGWMWEQDM VFESTPALVD LEKGEAVWNN MAGVVEVKGS GSGSGPGGWT  60
WEQNKAFENA LALVDLGEGE AVWNKIADAV GGKTAEEIKR HYELLVADVD AIEAGRVPLP  120
VYTDGGSPEE GGSGGKKGGG RVGGGRGGHG PKGSSKSVEQ EGRKGILWTE DEHRLFLLGL  180
EKYGKGDWRS ISRNFVISRT PTQVASHAQK YFIRLNSMNR ERRRSSIHDI TSVNGEASAA  240
QGPITGTNGQ AAVPGKSPKQ SPHQPGNLPP GVDAFGTTIG QPVGGPLVSA VGTPVTLPVA  300
APPHMGYAMH APVPGTVVPR APMYPMPPPP SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1449127279RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145KGGGRVGGGR
2138144GGRVGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669320.0AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726190.0AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192024.11e-143transcription factor SRM1-like
SwissprotQ9FNN61e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A453DFV10.0A0A453DFV1_AEGTS; Uncharacterized protein
TrEMBLN1R0230.0N1R023_AEGTA; Myb-like protein J
STRINGEMT150820.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-82MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]