PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT15044

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HD-ZIP

Protein Properties

Length: 745aa MW: 80976.7 Da PI: 6.1754

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT15044	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.9	3e-12	63	94	23	54
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 ++p++++r eL++++gL+ +qV++WFqNrR EMT15044 63 HHPDEKRRLELSRRTGLSPTQVQIWFQNRRNS 94 79****************************76 PP
2	START	96.7	4.3e-31	240	461	5	204
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT....E CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg....g 89 +a++el ++++++p+W++ e +++e+++ +++ + ea r +g+ +++++lv +l++ W++t++ +a++ + i++g g EMT15044 240 CAMEELKVLVSLGAPLWSLAEggevEVIDYKEYMKMMFPNERhemeFCAEATRKTGIISCTATDLVGILMNAD-WWSQTFPgivaSATISKIITPGdsgdG 339 78888899999*******99988555666666666555556779899********************.******888888889999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +qlm+ael +lsp vp R+ f+R +++ + w++vdvSvd +++ s + ++l pSg+ i+++ ngh++vtw+ ++ ++++++ l ++ EMT15044 340 LVQLMSAELRVLSPRVPvRKINFIRRCQKIAENIWAVVDVSVDGIRDQAAglndgaPSTYTACRLQPSGCHIQELNNGHCQVTWIVNMVHDEATVPPLHHP 440 **************************************988887666666767889************************************* PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l +sg a ga +w a lqr c EMT15044 441 LFRSGWALGACRWIASLQRRC 461 ****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0054	43	102	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.42E-10	62	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-12	62	93	IPR009057	Homeodomain-like
CDD	cd00086	4.85E-11	63	92	No hit	No description
Pfam	PF00046	1.1E-9	63	94	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.985	64	98	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
SMART	SM00234	2.2E-11	235	463	IPR002913	START domain
CDD	cd08875	4.05E-71	239	461	No hit	No description
Pfam	PF01852	1.8E-24	240	461	IPR002913	START domain
PROSITE profile	PS50848	27.568	241	466	IPR002913	START domain
SuperFamily	SSF55961	5.5E-19	241	462	No hit	No description
SuperFamily	SSF55961	4.76E-9	486	719	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MDGEWREQFN DLYNWLVLGY PGGDNQVIQQ NLGAEVNGLP GAAANMGTNT NAAAADQGNG 60 EGHHPDEKRR LELSRRTGLS PTQVQIWFQN RRNSGKGYDV RGCKGGKTLE KYISTKAKSK 120 AQKKETEEFQ EENDRLQAEK QALMSAMQNK ICFICRGEDT PERQRLYAEN VMLKDAHMRI 180 ADFLKSVSGG RLQVINHTVV DTHAPLTLTA PNPVMIPDEG VARDNPETGG DTLVIQHVAC 240 AMEELKVLVS LGAPLWSLAE GGEVEVIDYK EYMKMMFPNE RHEMEFCAEA TRKTGIISCT 300 ATDLVGILMN ADWWSQTFPG IVASATISKI ITPGDSGDGL VQLMSAELRV LSPRVPVRKI 360 NFIRRCQKIA ENIWAVVDVS VDGIRDQAAG LNDGAPSTYT ACRLQPSGCH IQELNNGHCQ 420 VTWIVNMVHD EATVPPLHHP LFRSGWALGA CRWIASLQRR CDYIASLHTN PVLTLNTRSG 480 GAAPITPEGR KSVLEVAHRM TLKFYEAICG PGTQPWTSVD ERRGSCGVGA ERFEVDVRVV 540 TFPVGTGATV LRATTTVWLP GTPAQQVFNY LCDGDRRTEW DIGANRTSTI RQEGCFGTGQ 600 LDGNSVSLLR TIASNGAYGK LILQESCIDA SCMVLAYAQI DDQTIQDVIN GTNTSFSLLP 660 SGVVVLPDGN AEPGAPPTSA MCSSSSSASH RSNSGSLVSI MYQTLLSGQP PEHLFKAVAE 720 NVGNLLCQAI DKIKSGVHAN VVLAA

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MDGEWREQFN DLYNWLVLGY PGGDNQVIQQ NLGAEVNGLP GAAANMGTNT NAAAADQGNG  60
EGHHPDEKRR LELSRRTGLS PTQVQIWFQN RRNSGKGYDV RGCKGGKTLE KYISTKAKSK  120
AQKKETEEFQ EENDRLQAEK QALMSAMQNK ICFICRGEDT PERQRLYAEN VMLKDAHMRI  180
ADFLKSVSGG RLQVINHTVV DTHAPLTLTA PNPVMIPDEG VARDNPETGG DTLVIQHVAC  240
AMEELKVLVS LGAPLWSLAE GGEVEVIDYK EYMKMMFPNE RHEMEFCAEA TRKTGIISCT  300
ATDLVGILMN ADWWSQTFPG IVASATISKI ITPGDSGDGL VQLMSAELRV LSPRVPVRKI  360
NFIRRCQKIA ENIWAVVDVS VDGIRDQAAG LNDGAPSTYT ACRLQPSGCH IQELNNGHCQ  420
VTWIVNMVHD EATVPPLHHP LFRSGWALGA CRWIASLQRR CDYIASLHTN PVLTLNTRSG  480
GAAPITPEGR KSVLEVAHRM TLKFYEAICG PGTQPWTSVD ERRGSCGVGA ERFEVDVRVV  540
TFPVGTGATV LRATTTVWLP GTPAQQVFNY LCDGDRRTEW DIGANRTSTI RQEGCFGTGQ  600
LDGNSVSLLR TIASNGAYGK LILQESCIDA SCMVLAYAQI DDQTIQDVIN GTNTSFSLLP  660
SGVVVLPDGN AEPGAPPTSA MCSSSSSASH RSNSGSLVSI MYQTLLSGQP PEHLFKAVAE  720
NVGNLLCQAI DKIKSGVHAN VVLAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194819.1	0.0	homeobox-leucine zipper protein ROC6-like
TrEMBL	R7WAE4	0.0	R7WAE4_AEGTA; Homeobox-leucine zipper protein ROC5
STRING	EMT15044	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-106	homeodomain GLABROUS 1