PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14989
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 123aa    MW: 13811.9 Da    PI: 9.5214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14989genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.6e-1125871886
              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
              +p +f ++        +  ++   +g sW + ++ + k +r  l +GW++F+  n+L++gD +vF+l++
  EMT14989 25 IPTHFQRRLPAR----RAAVVLRCRGSSWILSYCGDTKLKR--LDQGWEDFAVHNRLQVGDACVFELVS 87
              666666555322....246777789********55555555..***********************764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-112387IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-1024102No hitNo description
PROSITE profilePS508639.99624104IPR003340B3 DNA binding domain
PfamPF023621.8E-92487IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-132487IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAASFIINWS CPDLLCFLRR TVQIIPTHFQ RRLPARRAAV VLRCRGSSWI LSYCGDTKLK  60
RLDQGWEDFA VHNRLQVGDA CVFELVSGYA GDGGKREVVA CRSPRISPPK ETPPTSPSWT  120
SHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184539.14e-47B3 domain-containing protein Os06g0112300-like
SwissprotQ9LHY91e-20Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLR7WAA76e-86R7WAA7_AEGTA; B3 domain-containing protein
STRINGEMT149899e-87(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]