PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 32910.4 Da PI: 8.3642 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6e-53 | 11 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 +ppGfrFhP+deelv +yL +k++g++ v i +vd++k+ePwdLp+++ + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd+++l++ +++ EMT14807 11 MPPGFRFHPRDEELVLDYLLHKLTGRRAYG-GVdIVDVDLNKCEPWDLPEAACVGGREWYFFSLRDRKYATGQRTNRATRSGYWKATGKDRAILAHgaGDA 110 79*************************877.555***************7666789***************************************977778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg++ktLvfy+grapkg++t+Wvmhe+rle EMT14807 111 LVGMRKTLVFYQGRAPKGTRTEWVMHEFRLE 141 8***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 2 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.722 | 11 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MSSIGMMEAR MPPGFRFHPR DEELVLDYLL HKLTGRRAYG GVDIVDVDLN KCEPWDLPEA 60 ACVGGREWYF FSLRDRKYAT GQRTNRATRS GYWKATGKDR AILAHGAGDA LVGMRKTLVF 120 YQGRAPKGTR TEWVMHEFRL EEERHRHHQQ QKVGAATAEA RCQLKEDWVL CRVFYKSRTT 180 SPRPPSDEAC TFFSELDLPT MPPLAPLINA YIAFDSGTAM NTIEQVSCFS GLPALPLRGS 240 MSFGDLLGWD NPEKKAIRTA LSNMSSNSNS KLELTPNWSQ ENGLSQMWTP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 6 | 179 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM037184 | 0.0 | HM037184.1 Triticum aestivum NAC transcription factor (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158480.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 7e-76 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3B6TFK5 | 0.0 | A0A3B6TFK5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RYW4 | 0.0 | A0A453RYW4_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QXF9 | 0.0 | N1QXF9_AEGTA; NAC domain-containing protein 21/22 | ||||
STRING | EMT14807 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_7DL_BDD45DB24.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-74 | NAC domain containing protein 1 |