PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10328.8 Da PI: 10.2395 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W++++r g++R++k+c++rw++yl EMT14466 16 KGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 63 678********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.209 | 11 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 14 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-21 | 18 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.93E-12 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 63 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 64 | 90 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MERPSSGGLG QPKLRKGLWS PEEDEKLYNH IIRHGVGCWS SVPRLAGLHR CGKSCRLRWL 60 NYLRPNLRRG SFSQQEEDHI IALHQILGNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-14 | 10 | 89 | 1 | 79 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB252145 | 1e-113 | AB252145.1 Triticum aestivum Tamyb2 mRNA for myb-related protein, complete cds. | |||
GenBank | KM066946 | 1e-113 | KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158685.1 | 2e-59 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 2e-53 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3B6A1L2 | 5e-58 | A0A3B6A1L2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452ZQQ5 | 5e-58 | A0A452ZQQ5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A452ZQS7 | 5e-58 | A0A452ZQS7_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A452ZQS9 | 4e-58 | A0A452ZQS9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A452ZQV0 | 7e-58 | A0A452ZQV0_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QZ78 | 4e-59 | N1QZ78_AEGTA; Myb-related protein Hv33 | ||||
STRING | EMT14466 | 7e-60 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 7e-41 | myb domain protein 86 |