PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT14419

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

AP2

Protein Properties

Length: 557aa MW: 59064 Da PI: 6.637

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT14419	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.9	1.1e-12	262	318	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g EMT14419 262 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 318 78*****************77776664346655.77****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.0E-9	262	318	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-14	262	327	IPR016177	DNA-binding domain
CDD	cd00018	1.63E-17	262	326	No hit	No description
PROSITE profile	PS51032	17.069	263	326	IPR001471	AP2/ERF domain
SMART	SM00380	7.9E-23	263	332	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.3E-13	263	327	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-6	264	275	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-4	337	386	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-5	357	380	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-6	362	382	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQH QGLFYPSSVA AAYSLGGDVA 60 TDGYYSQLAS MPLKSDGSLC IMEALRRTDQ QDHHGPKLED FLGAGQPAMA LSLDNTSNFY 120 YYGGGGGAGG QHGQSHGGSF LQQAYDVYSG PATASVLAAN EDAAAATAMA NWVQVARGAT 180 AYATAENVLS AAADRQQHLH HHPLALSMSS AGSLSSCVTA GAEYGGVGAT VDGGRKRGGA 240 TAGQKQPVHH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD 300 MEEKAARAYD QAALKYWGPS THINFPLEDY QQELEEMKNM TRQEYVAHLR SSCVYVEEAA 360 EAYDIAAIKF RGLNAVTNFD ITRYDVDKIM ASNTLLPGEH ARRNKDDNAA PLPLPAPDDC 420 AASALVPVST PGTDTGGSGQ HRYHDVMSSG EAFSALHDLV TVDGHTAQGG NGAHVHMSMS 480 GASSLVTSLS NSREESPDRG GGLSMLFAKP PQQPATTTAA SPKLMSTLKP LGSWASSARP 540 AAVSIAHMPM FAAWSDA

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQH QGLFYPSSVA AAYSLGGDVA  60
TDGYYSQLAS MPLKSDGSLC IMEALRRTDQ QDHHGPKLED FLGAGQPAMA LSLDNTSNFY  120
YYGGGGGAGG QHGQSHGGSF LQQAYDVYSG PATASVLAAN EDAAAATAMA NWVQVARGAT  180
AYATAENVLS AAADRQQHLH HHPLALSMSS AGSLSSCVTA GAEYGGVGAT VDGGRKRGGA  240
TAGQKQPVHH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  300
MEEKAARAYD QAALKYWGPS THINFPLEDY QQELEEMKNM TRQEYVAHLR SSCVYVEEAA  360
EAYDIAAIKF RGLNAVTNFD ITRYDVDKIM ASNTLLPGEH ARRNKDDNAA PLPLPAPDDC  420
AASALVPVST PGTDTGGSGQ HRYHDVMSSG EAFSALHDLV TVDGHTAQGG NGAHVHMSMS  480
GASSLVTSLS NSREESPDRG GGLSMLFAKP PQQPATTTAA SPKLMSTLKP LGSWASSARP  540
AAVSIAHMPM FAAWSDA

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT088263	6e-55	BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155443.1	0.0	AP2-like ethylene-responsive transcription factor ANT isoform X2
Swissprot	Q84Z02	0.0	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	R7W9B9	0.0	R7W9B9_AEGTA; AP2-like ethylene-responsive transcription factor ANT
STRING	EMT14419	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP948	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	3e-63	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]