PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Dof | ||||||||
Protein Properties | Length: 117aa MW: 12724.3 Da PI: 10.0259 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 97.7 | 8.2e-31 | 56 | 103 | 2 | 49 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnv 49 ++++l+cprC st+tkfCyynnys++qPr++C++CrryWt+GG+lrnv EMT14108 56 QQAKLECPRCSSTDTKFCYYNNYSTTQPRHYCRTCRRYWTHGGTLRNV 103 67899******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-18 | 56 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.0E-28 | 58 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 23.869 | 60 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 62 | 98 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAPASASLLP AASSNAGTKR PFAAEASDAT ELPLALPQVQ ESAAGKKNGN GQSPQQQAKL 60 ECPRCSSTDT KFCYYNNYST TQPRHYCRTC RRYWTHGGTL RNVRNVNLSK GIVMRAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ687390 | 1e-137 | FJ687390.1 Triticum aestivum Dof transcription factor 4 (Dof4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149474.1 | 4e-70 | dof zinc finger protein DOF5.8-like | ||||
Swissprot | O24463 | 2e-23 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | N1R2U0 | 8e-82 | N1R2U0_AEGTA; Dof zinc finger protein PBF | ||||
STRING | EMT14108 | 1e-82 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 8e-26 | Dof family protein |
Publications ? help Back to Top | |||
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