PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT13975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 27538.7 Da PI: 5.6906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135 | 5.1e-42 | 5 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rF Pt+eel+++yL++k++g++ ++e+vi+ vd+y+v+P +L + + e + w++F+ r++++a+g r++r+t sgyWka g+ v EMT13975 5 LPPGYRFYPTEEELICFYLRNKLDGSRGDIERVIPVVDVYSVDPLQLSEiherlcgG--GggEGEPWFYFCARQEREARGGRPSRTTPSGYWKAAGTPGVV 103 79****************************99***************8545655432..1436779*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++ +gl+kt+vfy+grap+g+kt+W m+eyr+ EMT13975 104 YSADRRPIGLRKTMVFYRGRAPSGTKTKWKMNEYRA 139 **********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-47 | 3 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.883 | 5 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-23 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MADGLPPGYR FYPTEEELIC FYLRNKLDGS RGDIERVIPV VDVYSVDPLQ LSEIHERLCG 60 GGGGEGEPWF YFCARQEREA RGGRPSRTTP SGYWKAAGTP GVVYSADRRP IGLRKTMVFY 120 RGRAPSGTKT KWKMNEYRAF QHEHDGAGAP TATGGPHAAA PPNLPPQLRS EFSLCRLYTK 180 SGTLRQFDRR PVAAAAGGAA GDIPGPSTAA TASPDDGDGS GGSMHPLEED LMEGAGGDPY 240 GDDIATLAAL LYWPTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 4 | 186 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 4 | 186 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 4 | 186 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 4 | 186 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 4 | 186 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 4 | 186 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 4 | 186 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-158 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158560.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3B6GXD1 | 0.0 | A0A3B6GXD1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453FZL7 | 0.0 | A0A453FZL7_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W749 | 0.0 | R7W749_AEGTA; NAC domain-containing protein 90 | ||||
STRING | EMT13975 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-63 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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