PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 175aa    MW: 19854.1 Da    PI: 8.2235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13974genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-081359145
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     r +W +eEd+ +  a   l+     +W+++a++++ gRt+ +  +++q
         EMT13974 13 RRPWAKEEDKAFEAALVTLPDQapdRWERVAARLP-GRTPQEAWEHYQ 59
                     679*****************99*************.****98777777 PP

2Myb_DNA-binding45.81.4e-14108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE++l++d+ +++G g+W+ I+r     Rt+ q+ s+ qky
         EMT13974 108 PWSEEEHKLFLDGLEKYGRGDWRNISRFAVRSRTPTQVASHAQKY 152
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.199866IPR017930Myb domain
SMARTSM007173.9E-51264IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-101261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-61360IPR009057Homeodomain-like
PfamPF002492.7E-61359IPR001005SANT/Myb domain
CDDcd001675.38E-41853No hitNo description
PROSITE profilePS5129417.856101157IPR017930Myb domain
SuperFamilySSF466894.74E-17103158IPR009057Homeodomain-like
SMARTSM007179.7E-11105155IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-16106156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-11108151IPR009057Homeodomain-like
PfamPF002495.5E-12108152IPR001005SANT/Myb domain
CDDcd001678.32E-11108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDLYYQQAAP AARRPWAKEE DKAFEAALVT LPDQAPDRWE RVAARLPGRT PQEAWEHYQA  60
LVADVDLIER GAVDTPGCWD DDDGCTAAAA PGRRAGKPRG EERRRGIPWS EEEHKLFLDG  120
LEKYGRGDWR NISRFAVRSR TPTQVASHAQ KYFIRQANAA TRDSKRKSIH DITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-141477972RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673730.0AK367373.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158558.11e-126transcription factor DIVARICATA-like
SwissprotQ8S9H74e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3B6H1T21e-124A0A3B6H1T2_WHEAT; Uncharacterized protein
TrEMBLR7W8K01e-124R7W8K0_AEGTA; Myb-like protein J
STRINGEMT139741e-125(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-44MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]