PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 234aa    MW: 26660.9 Da    PI: 9.8099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13683genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.8e-52161441129
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lppGfrFhPtd e+++ yL +kv +k++++ +++ evd++k+ePw+Lp++++ +ekewyfFs++d+ky+ g r+n+at+ gyWkatgkdke+++  + +l+
  EMT13683  16 LPPGFRFHPTDVEIITAYLVPKVLKKPFDT-RAVGEVDLNKHEPWELPEMANMGEKEWYFFSQKDRKYPPGIRTNKATTVGYWKATGKDKEIFHPpTMSLI 115
               79***************************9.88***************9888999***************************************988889* PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
               g+kk+Lvfykgrapkgekt+W+mheyrle
  EMT13683 116 GMKKILVFYKGRAPKGEKTNWIMHEYRLE 144
               ***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5810179IPR003441NAC domain
PROSITE profilePS5100556.05616179IPR003441NAC domain
PfamPF023651.9E-2617143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENHLQVQQQ QQQLKLPPGF RFHPTDVEII TAYLVPKVLK KPFDTRAVGE VDLNKHEPWE  60
LPEMANMGEK EWYFFSQKDR KYPPGIRTNK ATTVGYWKAT GKDKEIFHPP TMSLIGMKKI  120
LVFYKGRAPK GEKTNWIMHE YRLESGKQPT PNLPTDITNA ATINASSKED YVVCRIFHKS  180
TGLKKVVMSS YAMPMPMVAE RQLGFQESIT LPPLMDYNAS SPLAPPLSLH ASSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5131852171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5131852171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5131852171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5131852171NO APICAL MERISTEM PROTEIN
4dul_A1e-5131852171NAC domain-containing protein 19
4dul_B1e-5131852171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163987.11e-166NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-78NC100_ARATH; NAC domain-containing protein 100
TrEMBLN1R2N11e-175N1R2N1_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGEMT136831e-176(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-76NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]