PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13393
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 426aa    MW: 47611.1 Da    PI: 8.8938
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13393genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.7e-131167155
       AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
              s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  EMT13393 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
              57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-141177IPR016177DNA-binding domain
PfamPF008471.5E-81167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-121276IPR001471AP2/ERF domain
SMARTSM003804.2E-181281IPR001471AP2/ERF domain
PROSITE profilePS5103218.2281275IPR001471AP2/ERF domain
PRINTSPR003674.5E-51324IPR001471AP2/ERF domain
PRINTSPR003674.5E-55777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT QINFPVSDYT RDVEEMQMIS KEDYLVSLRR KSSAFSRGLP KYRGLPRQLH  120
NSRWDASLGQ LLGNDYMNLS CGKGIALDGK FAGSFGLERK IDLTNYIRWW VPKKTRQSDI  180
SKAEEVADEI RAIEGSVQLT EPYKLPSLGL GSHSNPSSAG LSACSILSQS GAFKSFLEKS  240
TKLSEECTFS KEIDEGKGVV SVPTTGHHTS PVDINMNGLL VQRAPYTLAP VMPTPMKSTW  300
SPADPSADHL FWSNFILPSS QPVTMATITT TTDVRLSILT DSPGEYPFWD ALTASNLMPV  360
RLMLTTSFTS GVFRAANLLM WWLVSNTLCI NTSQNMHRRF EEENRNRNVI FVCLVAYLVQ  420
IFGLLS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557490.0AK355749.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1025C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196301.10.0AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_020196302.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK23e-89AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLR7W2V90.0R7W2V9_AEGTA; AP2-like ethylene-responsive transcription factor
STRINGEMT133930.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.18e-86AP2 family protein