PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT13043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 181aa MW: 20791.6 Da PI: 8.2292 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 91 | 128 | 10 | 47 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +l++++ +G g Wk I++ + +++t+ q+ s+ qky EMT13043 91 KLFLQGLGVYGRGKWKEISKDFVTTKTPVQVSSHAQKY 128 68999999*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.75E-10 | 90 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-9 | 91 | 131 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 4.74E-4 | 91 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 93 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MKARFEVEDP EPVITGFNNT DHSCDGVNHD KNEKPDGLEL RLWWPCETMQ QEGIRVMEEG 60 KQATMLVGNK VKVPENGMSI HQPVIVPSAR KLFLQGLGVY GRGKWKEISK DFVTTKTPVQ 120 VSSHAQKYFR RIKKGEQERQ RYSINDLELK IVKPWTIGNN SSAYRSPIFD DADNHNQSFD 180 M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164804.1 | 1e-132 | uncharacterized protein LOC109750257 | ||||
TrEMBL | N1R299 | 1e-134 | N1R299_AEGTA; Uncharacterized protein | ||||
STRING | EMT13043 | 1e-135 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-17 | MYB family protein |