PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12977
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 313aa    MW: 33787.7 Da    PI: 8.2343
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12977genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.7e-1386135355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GV++++++grW A+I  +s    +k  +lg+f  + +Aa+a++ a+ k++g
  EMT12977  86 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 135
               9***************999754...5**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.004145IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-61240IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-71240IPR001471AP2/ERF domain
PROSITE profilePS510328.7811239IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1684144IPR016177DNA-binding domain
CDDcd000185.34E-1384145No hitNo description
Gene3DG3DSA:3.30.730.103.1E-1785143IPR001471AP2/ERF domain
PROSITE profilePS5103218.14985143IPR001471AP2/ERF domain
SMARTSM003809.2E-2985149IPR001471AP2/ERF domain
PfamPF008475.1E-886135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESSGIIATC GYDMEEKAAR AYDLAALKYW GASTHINFPV EDYQEELEVM KNMTRQEYVA  60
HLRRHSRRGR HWCRKSSGFS RGASMYRGVT RHHQQGRWQA RIGRVSGNKD LYLGTFSAEA  120
DAAEAYDVAA IKFRGLNAVT NFDINRYDVD KIMESSTLLP GDQVRRRKDG PDESAAVVAS  180
AAAALVQAGS AADYWRQPAA VTTDDQSRHH LDLLSSESFS LLRGVVSVDG DAAGAQQGQG  240
NRMSGASSLA TSLSNSREQS PDQGGGLAVL LARPAAPKLA SSLPMGTWVS SPAPARPGVS  300
VAHMPVFAAW ADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156625.11e-179AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z021e-120CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLN1QVL50.0N1QVL5_AEGTA; AP2-like ethylene-responsive transcription factor ANT
STRINGEMT129770.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-68AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]