PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12928
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 290aa    MW: 33849.4 Da    PI: 9.5365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12928genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16123214194
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
               f+k +t++ ++k + + +pk+f  e+        +  ++l de   ++ + ++  +++++y++ kGW++F+  ++L +gD +vF++++r + +el++
  EMT12928 123 FVKPMTHNCASKAAEMKIPKHFS-EYlpA----HDEGVVLVDEADDEFHMMYNAHRQGRHYYFHKGWRGFAAHHDLAVGDCLVFHMTERaKFKELHI 214
               8999*9999*************8.67443....2334***************88888888*************************998856666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-17120210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-15121210IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-20121210No hitNo description
PROSITE profilePS5086310.574123217IPR003340B3 DNA binding domain
PfamPF023625.0E-14123209IPR003340B3 DNA binding domain
SMARTSM010199.6E-6123218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAESNSYEEQ RRRQIEENRR KLEELRLHHL SAAVREAAAR PKPNPKPRPK RKAPEPGELR  60
RSGRVAGLPE QPKYVEGAEQ RGYRGVYEAY AVWKGPTDEE RAGAIAKAEE LQRRIHRIRW  120
PAFVKPMTHN CASKAAEMKI PKHFSEYLPA HDEGVVLVDE ADDEFHMMYN AHRQGRHYYF  180
HKGWRGFAAH HDLAVGDCLV FHMTERAKFK ELHIQYQCIY NFVRSTFSEQ TQTMKATKLQ  240
MTLRMKSNED VCFEYNVRSE QFVGEPRSPL MLQSATAISC WLRVESHTRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148833.11e-154B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-57Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLN1QV410.0N1QV41_AEGTA; B3 domain-containing protein
STRINGEMT129280.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4911922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]