PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 545aa MW: 58964.5 Da PI: 7.4733 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d v+++G g+W+++ r+ g+ R++k+c++rw ++l EMT12896 26 KGPWTQAEDRVLLDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 73 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.6e-15 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ + G++ W++I+ +++ gRt++++k++w++ EMT12896 79 KGPFSPEEERLILRLHGLIGNK-WARISTHLP-GRTDNEVKNFWNT 122 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.948 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-29 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 25 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.72E-11 | 28 | 73 | No hit | No description |
Pfam | PF13921 | 3.1E-14 | 29 | 88 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 41 | 50 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.6 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 78 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.89E-11 | 81 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 81 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MATAMDTTVP RSGLGEGGGG AGGLKKGPWT QAEDRVLLDH VRRHGEGNWN AVRRETGLQR 60 CGKSCRLRWA NHLRPNLRKG PFSPEEERLI LRLHGLIGNK WARISTHLPG RTDNEVKNFW 120 NTRLKRRQRA GQSLYPPDVE REIAFMRAQN INPFADADGN TAASPFSDPF ALPPRPPSST 180 KPASHSHSSP LINQHYPLLN EMQGMQMRHH AVQHAHPQPA FHHHHGGIRL PGLPPLPTRP 240 RELPSNQIET ASCSGGADGL LEALLLGVDE HQLPRPNHGV CRAGSMPDLM YGGVSSGSDS 300 DVTSQFPPGP GGQDPHHGGK WDFLVVFLTG GVHMAALTSQ NSHVVMFDSS VLPYPVSPLP 360 DTALPIHALL RLVVTVSSLS ASVPVLLGQR IRTDGGGEGA HDDELAGLMA AHQRWKARRR 420 TASVRQYDLE GGVDSNELFV FPVAFDACGS LVGLGRQLQS SKLWLLLAFA DDVKPPMRRA 480 TSAAENETSG MFGVAHGSIS GEWFGTGVGS PGPSSVVTTE DEFGLEMQQL MSSLPLSADE 540 LNWNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 20 | 127 | 1 | 107 | B-MYB |
1h8a_C | 2e-28 | 24 | 127 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373804 | 0.0 | AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185931.1 | 0.0 | myb-related protein Zm1-like | ||||
TrEMBL | N1QUP9 | 0.0 | N1QUP9_AEGTA; Transcription factor GAMYB | ||||
STRING | EMT12896 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26930.1 | 2e-56 | myb domain protein 97 |