PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12896
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 545aa    MW: 58964.5 Da    PI: 7.4733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12896genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+d v+++G g+W+++ r+ g+ R++k+c++rw ++l
         EMT12896 26 KGPWTQAEDRVLLDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 73
                     79******************************************9986 PP
2Myb_DNA-binding46.58.6e-1579122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l+++++ + G++ W++I+ +++ gRt++++k++w++
         EMT12896  79 KGPFSPEEERLILRLHGLIGNK-WARISTHLP-GRTDNEVKNFWNT 122
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9482173IPR017930Myb domain
SuperFamilySSF466891.31E-2923120IPR009057Homeodomain-like
SMARTSM007171.4E-122575IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-212780IPR009057Homeodomain-like
CDDcd001678.72E-112873No hitNo description
PfamPF139213.1E-142988No hitNo description
PROSITE patternPS0017504150IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.674128IPR017930Myb domain
SMARTSM007172.8E-1578126IPR001005SANT/Myb domain
CDDcd001678.89E-1181124No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2481127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MATAMDTTVP RSGLGEGGGG AGGLKKGPWT QAEDRVLLDH VRRHGEGNWN AVRRETGLQR  60
CGKSCRLRWA NHLRPNLRKG PFSPEEERLI LRLHGLIGNK WARISTHLPG RTDNEVKNFW  120
NTRLKRRQRA GQSLYPPDVE REIAFMRAQN INPFADADGN TAASPFSDPF ALPPRPPSST  180
KPASHSHSSP LINQHYPLLN EMQGMQMRHH AVQHAHPQPA FHHHHGGIRL PGLPPLPTRP  240
RELPSNQIET ASCSGGADGL LEALLLGVDE HQLPRPNHGV CRAGSMPDLM YGGVSSGSDS  300
DVTSQFPPGP GGQDPHHGGK WDFLVVFLTG GVHMAALTSQ NSHVVMFDSS VLPYPVSPLP  360
DTALPIHALL RLVVTVSSLS ASVPVLLGQR IRTDGGGEGA HDDELAGLMA AHQRWKARRR  420
TASVRQYDLE GGVDSNELFV FPVAFDACGS LVGLGRQLQS SKLWLLLAFA DDVKPPMRRA  480
TSAAENETSG MFGVAHGSIS GEWFGTGVGS PGPSSVVTTE DEFGLEMQQL MSSLPLSADE  540
LNWNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28201271107B-MYB
1h8a_C2e-282412725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738040.0AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185931.10.0myb-related protein Zm1-like
TrEMBLN1QUP90.0N1QUP9_AEGTA; Transcription factor GAMYB
STRINGEMT128960.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.12e-56myb domain protein 97