PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12790
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 784aa    MW: 85094.2 Da    PI: 4.7668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12790genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-143074348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd+ l   ++ +G+++W+ Ia  +   +t+ qc+ rw++yl
         EMT12790 30 SWSAEEDDVLRAQIAHHGTDNWTVIATQFK-DKTARQCRRRWYNYL 74
                     6****************************9.**************7 PP
2Myb_DNA-binding24.37.2e-0880112135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +g W+ eEd ll +a k+lG++ W+ Ia+ +  gR
         EMT12790  80 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GR 112
                      688*******************.******998.87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.242378IPR017930Myb domain
SuperFamilySSF466891.27E-2227113IPR009057Homeodomain-like
SMARTSM007176.3E-132776IPR001005SANT/Myb domain
CDDcd001678.66E-133074No hitNo description
PfamPF139213.4E-153191No hitNo description
Gene3DG3DSA:1.10.10.601.5E-193181IPR009057Homeodomain-like
PROSITE profilePS512948.68579157IPR017930Myb domain
SMARTSM007173.2E-979155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-1382156IPR009057Homeodomain-like
CDDcd001674.82E-583112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MATGPDLTSS SAADAAAASS AAKKDRHIVS WSAEEDDVLR AQIAHHGTDN WTVIATQFKD  60
KTARQCRRRW YNYLNTECKK GGWSREEDML LCEAQKLLGN KWTEIAKVVS GREKGGAMKR  120
RGDWRREDQK GDRGFWATGR TDNAVKNRFS TLCKRRAKDD ELFEENGTVC SNASAKRVLT  180
RSGGVTCAAP GSSPPIKNMS SCKPDFKENL APNMKSFGQQ KSIQQDSRQP LASICPDNQS  240
VNIVKTQSLV TKTSTKQLHG EEQSCVKHEG NFLKRNDPKL ATLLQQADLL SSLATKVNTE  300
NTSQSMDEAW QKLQNHLVKK DDNDMSESSM SGTASLLDDL DDLIVDPYEN EEEDEQKSRE  360
QNGATSQMAP DQIMDNCPVD QIADESSLCG NTLSSTMEPC PEILAHINLG EAAEDMGLHF  420
MEYSSPTHAA QAQQAKADAE IPASVDLSES AEGSWSQIME YTSPARTVLH ANSSPAHTVQ  480
AQQAKADAEI PVSVDLSEAA EGSWSQFMEY TSPAHTVLHA EGDAETPASV KLSEAAEGSL  540
PQCMEHMSPA HTLLRAKTDS EIPASANSNE AAEGSWSQFM EYMSPAHIVL HAKADAETPA  600
SINLGEAAEG SLPQCMEPMS PAHTLLRAKT DYEIPASANL SEAAKDDSLQ CTEYTSPARA  660
DLQANADAEI SENFSEVAQD SRLQCAKFTS PAHTAIKGKA VAKKGTSENC SDVPEDSSTQ  720
PCMEFTSPAH TVPTFHPFTD NVPTPKITAS ERNFLLSVLE LASPGSKPET SQQPSCKRAL  780
LNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-233115610107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519130.0JF951913.1 Triticum carthlicum clone TaMYB30 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160172.10.0transcription factor MYB124-like isoform X1
TrEMBLR7W5N00.0R7W5N0_AEGTA; Myb-related protein B
STRINGEMT127900.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.15e-66myb domain protein 88