PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12716
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 248aa    MW: 27698.2 Da    PI: 8.4591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12716genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-17139229599
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + +++ +s  +v+p +f++eh   +++sk+ltl d++   W+v + y+ ++++  +++GW++F   n+L+  D++vF+l+ +++   +v+++r+
  EMT12716 139 IKAASAYNSFFMVIPSEFVREHL--PHTSKKLTLWDPQATPWQVDYVYCSHRSAGAFSRGWSQFSIGNNLEKFDVCVFELIAEDT--IKVHIYRA 229
               55677888999***********5..457889*****************99999999************************98444..58988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-22129229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21129229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-22133228No hitNo description
PROSITE profilePS5086313.634135230IPR003340B3 DNA binding domain
SMARTSM010195.2E-14135230IPR003340B3 DNA binding domain
PfamPF023624.6E-15138229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MCVEKPSALH AKPSKDFKEE SDEDDNGVAP QEENNGTTKK PTGEIYADGS TLKKCSNASV  60
KATRQKRNKN AADPSESLEV AGACRSARTS IKSNDAVMKV QRQHAIVSQR LPVSEGQKKY  120
ALQRAEIFTS KYPSTLQVIK AASAYNSFFM VIPSEFVREH LPHTSKKLTL WDPQATPWQV  180
DYVYCSHRSA GAFSRGWSQF SIGNNLEKFD VCVFELIAED TIKVHIYRAQ LLIAQYQHQE  240
ELSAAIPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177351.11e-175B3 domain-containing protein Os11g0197600-like isoform X2
RefseqXP_020183314.11e-179B3 domain-containing protein Os11g0197600-like
TrEMBLR7W1L70.0R7W1L7_AEGTA; B3 domain-containing protein
STRINGEMT127160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.19e-12B3 family protein