PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | TALE | ||||||||
Protein Properties | Length: 629aa MW: 67951 Da PI: 8.7627 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.7e-10 | 386 | 423 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + EMT12590 386 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 423 554459******************************88 PP | |||||||
2 | BELL | 71.5 | 1.4e-23 | 265 | 319 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V+krY+qy++q+q+vi+sFe vag +a+p+t+lAl+ ++rhFrc+k +i +q+ EMT12590 265 RVCKRYRQYYQQVQAVIASFESVAGFSNAAPFTALALRVMARHFRCIKGMILSQL 319 79*************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-21 | 145 | 317 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-34 | 150 | 315 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 364 | 427 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.56E-12 | 367 | 428 | No hit | No description |
SMART | SM00389 | 3.8E-10 | 367 | 431 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 369 | 436 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 370 | 431 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.8E-19 | 384 | 423 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MAPAAAAASG GQLYHVPQHS RREKLRFPPD AAAEDSPPTP LAHHHHQQHQ QHQAGAWPPP 60 AFYSYASSSS SYSPHSPTVP QGQQLVLNGL TAQQVTAQQF PQIPTQNFSL SLSSASSNPA 120 TTPPAPRKQE PGAAAPAAWP YGPFTGYATV LGRSRFLGPA QKLLEEICDV GGAAAHADTS 180 VLDEGLLDAD AMDGADDAAG HELDTSGPMS GAEQQWKKTR LISMMEERIK DWMLISFTAL 240 STPFANIICY MKPQLISSVL ERFGRVCKRY RQYYQQVQAV IASFESVAGF SNAAPFTALA 300 LRVMARHFRC IKGMILSQLR NTSKMPVKEG MSKDITIFGL GGGGGAPVGG FQRGGSVNGF 360 GQPHNIWRPQ RGLPERSVTV LRAWLFEHFL HPYPTDGDKQ MLAKQTGLTR NQVSNWFINA 420 RVRLWKPMVE EIHNVEMRQV HKHSPHDKGQ QNGVHGQAHQ HSSQQQQQRS GKRSEPCDSH 480 PGQSSGVTRN HHHHNAAAAA SSHGGGFPDD LSQLSHSMQQ GQVTFAGYGA LPSQQQHGSM 540 ASPQHHHHHH VGVGVGGAVN AGGGGGGSLT LGLHQNNRVC FGEPLPANLA HRFGLEDVVS 600 DPYVMGSFGG QDRHFAKEIG GHLLHDFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 373 | 431 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 373 | 431 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 5e-16 | 373 | 430 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 373 | 430 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 6e-16 | 373 | 431 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 6e-16 | 373 | 431 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB546647 | 0.0 | AB546647.1 Triticum aestivum WBLH4 mRNA for BEL1-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175344.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | M8BFS7 | 0.0 | M8BFS7_AEGTA; BEL1-like homeodomain protein 9 | ||||
STRING | EMT12590 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 2e-50 | BEL1-like homeodomain 8 |