PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 33195.7 Da PI: 8.179 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 108.2 | 4.2e-34 | 102 | 157 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprCds ntkfCy+nnys +qPr+fC+aCrryWt+GGalrnvPvG+ r++ k EMT12240 102 GLNCPRCDSINTKFCYFNNYSFTQPRHFCRACRRYWTRGGALRNVPVGSVYRRHAK 157 579**********************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 83 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.521 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-29 | 103 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 105 | 141 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MIFPPTFLDS SNCWNTNHNQ PQLQEIGNNT HITTIPSPAG HDDGGGDNSN EGGLMATAGA 60 GAGRGDHGGV GAEYGHGGSR NSKPMSMSDR ARLARVPPPV PGLNCPRCDS INTKFCYFNN 120 YSFTQPRHFC RACRRYWTRG GALRNVPVGS VYRRHAKCRD KRKTTSAASE AAATGTSSTT 180 SMTSSSTSCA IGTGTAAPGL QSSMFRRGFA DSFDPASLGL SFPAGLLFAD SGAYAADGCV 240 QQHHDQAHGN RMEQWAAAQI DSFPFMHAMD NQMSGPPTEA MPITMAAMRG MFHFHLGPRS 300 GGGGNGDDGN GASLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194481.1 | 0.0 | dof zinc finger protein DOF5.8-like | ||||
TrEMBL | M8BEW5 | 0.0 | M8BEW5_AEGTA; Dof zinc finger protein | ||||
STRING | EMT12240 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-33 | OBF-binding protein 3 |