PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT12224

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YB

Protein Properties

Length: 170aa MW: 18726.3 Da PI: 6.5953

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12224	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.2	4.2e-52	14	107	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eq+rflPian++rim++ +P+n+ki+kdake++qecvsefisf+tseasdkc +ekrktingddl+w+++tlGfedyveplk+ylk yre ++ EMT12224 14 KEQERFLPIANIGRIMRRGVPENGKIAKDAKESIQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLKLYREGDT 107 89****************************************************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-48	11	121	IPR009072	Histone-fold
SuperFamily	SSF47113	1.11E-37	16	121	IPR009072	Histone-fold
Pfam	PF00808	3.3E-26	19	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-19	47	65	No hit	No description
PROSITE pattern	PS00685	0	50	66	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-19	66	84	No hit	No description
PRINTS	PR00615	3.3E-19	85	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSEAVGTPES GGAKEQERFL PIANIGRIMR RGVPENGKIA KDAKESIQEC VSEFISFITS 60 EASDKCMKEK RKTINGDDLI WSMGTLGFED YVEPLKLYLK LYREGDTSKG SKSEQAGKKE 120 VALNGQPGSS VRKTAVFRPC KVLTEEDNAA ADVATCVVLR KFDTFCQVTF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	4e-44	14	104	3	93	NF-YB
4awl_B	4e-44	14	104	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	4e-44	14	104	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078742	0.0	KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174231.1	1e-88	nuclear transcription factor Y subunit B-4-like
Swissprot	Q65XK1	5e-67	NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBL	M8BZH0	1e-122	M8BZH0_AEGTA; Nuclear transcription factor Y subunit B-4
STRING	EMT12224	1e-122	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	9e-57	nuclear factor Y, subunit B10

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]