PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12179
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 310aa    MW: 34516.2 Da    PI: 5.4039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12179genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.91.7e-107513581111
      GRAS  81 l..............................klfsevsPilkfshltaNqaIleavegeer 111
                                               +f+ +sP++kfsh+taNqaI ea+e+e+r
  EMT12179  75 PpqinneciekaliqltgaimgvgyllkcilLVFNGISPFVKFSHFTANQAIQEAFEREDR 135
               144445555555555667777777777655455************************9975 PP
2GRAS176.22.4e-54134303197374
      GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
               ++gEa+aV++ +  h+l+d +++ ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s+er++vE++ll+rei+nv
  EMT12179 134 DRGEAVAVHWLH--HSLYDVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSSERHVVEQQLLAREIRNV 227
               679********9..999988888888....**********************.899********************************************* PP

      GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +a  g +r+ + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  EMT12179 228 LAVGGPARTGDIK-FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGTLKLGWKDLCLLTASAWR 303
               *******999987.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.8691283IPR005202Transcription factor GRAS
PfamPF035148.5E-52134303IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGMNASFWYW EEEYIDILIG HNIVDVRALL AIIEARDEIS ALVARIEGRH ETRYEEATST  60
SLDSKKKEAR KIEPPPQINN ECIEKALIQL TGAIMGVGYL LKCILLVFNG ISPFVKFSHF  120
TANQAIQEAF EREDRGEAVA VHWLHHSLYD VTGNDSNTLN LIQRLAPKVV TMVEQDLSHS  180
GSFLARFVEA IHYYSALFDS LDASYSEDSS ERHVVEQQLL AREIRNVLAV GGPARTGDIK  240
FGNWREKLAQ SGFRAASLAG SAAAQASLLL GMFPSDGYTL VEENGTLKLG WKDLCLLTAS  300
AWRPFQALGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-94137304213380Protein SCARECROW
5b3h_A9e-94137304212379Protein SCARECROW
5b3h_D9e-94137304212379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650590.0AK365059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2030J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178107.11e-120protein SCARECROW 2-like
SwissprotQ2RB591e-109SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLM8BZB10.0M8BZB1_AEGTA; Uncharacterized protein
STRINGEMT121790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-82GRAS family protein