PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12137
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 243aa    MW: 26728.2 Da    PI: 7.9626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12137genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-057190120
              EEETTTTEEESSHHHHHHHH CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
              ++Cp C k+F+r  n++ H+
  EMT12137 71 FSCPVCFKTFNRYNNMQMHM 90
              89*****************9 PP
2zf-C2H211.90.00067157177323
               ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
               C  Cgk F  k + ++H +++
  EMT12137 157 CRRCGKAFAVKGDWRTHEKNC 177
               *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-56793No hitNo description
Gene3DG3DSA:3.30.160.603.1E-67190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.647198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-6137175No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGLPAAEADL LSGLSGRAAE EDEEEEDDCK PGGGHEEVPL GFSSTAPIGR LNKGQYWIPT  60
PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC  120
AAGCRNNIDH PRAKPLKDFR TLQTHYKRKH GLKPFLCRRC GKAFAVKGDW RTHEKNCGKL  180
WYCLCGSEFK HKRSLKDHAR AFGHGHGAFG CNGAAGGDGS FDDDDEGAVS EIEHDVVCGA  240
AAR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562440.0AC256244.1 Hordeum vulgare clone HV_Mba442-A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187283.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-117ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3B6TPK31e-180A0A3B6TPK3_WHEAT; Uncharacterized protein
TrEMBLA0A453RJ990.0A0A453RJ99_AEGTS; Uncharacterized protein
TrEMBLM8B5W40.0M8B5W4_AEGTA; Protein TRANSPARENT TESTA 1
STRINGEMT121370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]