PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12058
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YC
Protein Properties Length: 202aa    MW: 23148.3 Da    PI: 4.7812
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12058genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1499.6e-47471491100
     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
               ql++fw++q   ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ ++e krr l++sdiaaav+rtdi+dfl+d    
  EMT12058  47 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVTKEDKRRLLQRSDIAAAVARTDIYDFLLDLFTS 147
               89******99999************************************************************************************9888 PP

     NF-YC  99 de 100
               +e
  EMT12058 148 EE 149
               76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.44E-2720141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3061132IPR009072Histone-fold
PfamPF008088.6E-1870132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGDVTPAGSQ PTQLFPGNPA QLSAQEQLMY EQSREYQQQL QQQQQRQLQQ FWAEQRSEIE  60
QATDIKNHPL PPTRIRKIMK ADEDVRMISA EAPALFAKAC EMFTLEMTMR SWMVTKEDKR  120
RLLQRSDIAA AVARTDIYDF LLDLFTSEET EQGVLLPRTG QQPMGTQAGA YPYYYAPEQQ  180
VAGRSLVAVV VVSLEKHYEF VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4255144392NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191493.11e-133nuclear transcription factor Y subunit C-4-like
SwissprotQ655V57e-70NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLM8CAA41e-146M8CAA4_AEGTA; Nuclear transcription factor Y subunit C-2
STRINGEMT120581e-147(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-50nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]