PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11819
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 329aa    MW: 35610.1 Da    PI: 5.3729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11819genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
         EMT11819 15 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 62
                     89********************************************97 PP

2Myb_DNA-binding50.93.5e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ ++++++++G++ W++Ia++++ gRt++++k++w++
         EMT11819  68 RGNLTAEEQLVILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.791062IPR017930Myb domain
SuperFamilySSF466893.74E-3013109IPR009057Homeodomain-like
SMARTSM007172.2E-131464IPR001005SANT/Myb domain
PfamPF002497.7E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231669IPR009057Homeodomain-like
CDDcd001679.00E-111762No hitNo description
PROSITE profilePS5129425.50363117IPR017930Myb domain
SMARTSM007171.8E-1467115IPR001005SANT/Myb domain
PfamPF002491.2E-1468111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370116IPR009057Homeodomain-like
CDDcd001679.83E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAMAAMEEEA AELRRGPWTL EEDNLLMSYI ACHGEGRWNL LARCSGLKRT GKSCRLRWLN  60
YLKPDIKRGN LTAEEQLVIL ELHAKWGNRW SRIAQHLPGR TDNEIKNYWR TRVQKQARQL  120
KVDANSAVFR DAVRCYWMPR LLDKMSMAAA STAAPPPLME QHGQGVLSSS QSAAIGSDQL  180
CCYPAAGFNP SPSASTSGST AAAALQPAPV PCFSELNWED QYCYPSGGDL DGGAGGMELD  240
SAALLGSLGL DGLDLGPAES YLPDATLLDY LNYSSCTANA MNMMMVNGGN YNNSYCCGDA  300
MVDGDHHDTT TAATCHAARK LAGEWGGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27121161104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164367.10.0transcription factor MYB108-like
SwissprotQ9C9G77e-78MYB62_ARATH; Transcription factor MYB62
TrEMBLM8BYC50.0M8BYC5_AEGTA; Transcription factor MYB21
STRINGEMT118190.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-74myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]