PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11803
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 529aa    MW: 58926.1 Da    PI: 6.027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11803genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.67e-1261585291374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++++++c +av++++ +  + l+++l++++s +g+p+qRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++P+++f+++ aN a
  EMT11803 158 LKQVIVACGKAVDENNCH-EDLLISELQKMVSVSGEPIQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDICPFFRFGYMSANGA 256
               578999******996655.58899********************************************986.567888999******************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I eav+ge+ +HiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s   +   l  +g+rL ++A+++ +pfefn+ v  + ++++le+L+++ gE
  EMT11803 257 IAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAyaRGGGLDIVGRRLCNIAQSCCLPFEFNA-VNAASHEVTLEHLDIRMGE 356
               ************************************************988899999************************.79999************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a+aVn+++qlh+++desv++e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+yy+a+f+++++  pr+++ r++ E+++++r+ivn++ace
  EMT11803 357 AIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFSRYMETLDYYTAMFEAIDVACPRDDKVRMSTEQHCVARDIVNLIACE 457
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               gaer+erhe ++kWr+r+ +aGF+p+pls  +++++++ll+ ++s  y++ee++g ++lgWk+r+Lv+ SaWr
  EMT11803 458 GAERVERHEPFGKWRSRFAMAGFRPYPLSALVNNTIRTLLNDYNSY-YKLEEKDGVIYLGWKNRKLVVSSAWR 529
               ********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.655132510IPR005202Transcription factor GRAS
PfamPF035142.4E-123158529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSYRYPDNSQ IPYYSSSMHV GGNGTCYVQQ NHEDHHYVSS DDGSQNSDPK SQVIHPQYCT  60
LESSSANCVY AAHSSTSPQC RSGSHISVHD SHSDHTYDSP ASGITEVPGL GFTTLQELAD  120
ALFGSDSDAV SSDRSLVIGA AMHQSNWREL LGISSGDLKQ VIVACGKAVD ENNCHEDLLI  180
SELQKMVSVS GEPIQRLGAY MLEGLVARRY STGHALYKSL KCKEPQPTNS ELMSYMHLLY  240
DICPFFRFGY MSANGAIAEA VKGENFIHII DFQIAQGSQW VTMIQALAAR ASGPPYLRIT  300
GIDDSDSAYA RGGGLDIVGR RLCNIAQSCC LPFEFNAVNA ASHEVTLEHL DIRMGEAIAV  360
NFAYQLHHTP DESVCIENHR DRILRMVKSL SPRVVTLVEQ EANTNTAPFF SRYMETLDYY  420
TAMFEAIDVA CPRDDKVRMS TEQHCVARDI VNLIACEGAE RVERHEPFGK WRSRFAMAGF  480
RPYPLSALVN NTIRTLLNDY NSYYKLEEKD GVIYLGWKNR KLVVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-571555291375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517040.0AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156010.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6JLS90.0A0A3B6JLS9_WHEAT; Uncharacterized protein
TrEMBLA0A453IS110.0A0A453IS11_AEGTS; Uncharacterized protein
STRINGTraes_4DL_E50C77AEC.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]