PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT11673

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 490aa MW: 53224.2 Da PI: 7.2881

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT11673	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.8e-37	116	175	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s EMT11673 116 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 175 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	112	172	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	119	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	119	173	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	121	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MAALRDRGDA AIKLFGRTIP LLDAAAEGGI AAPSSPPKRP PVVTKLGNDA NSNDVMPCVS 60 NKLLNVEATP FCSKNREQND QAISKHGVEV RTGFKSEEIK TGSDGSGQDK VLKKPDIIVP 120 CPRCNSMETK FCYFNNYNVS QPRHFCRNCQ RYWTAGGNIR NVPVGSGRRR NKHASHFRHA 180 MMSCDANIAA PGDVSNEIHH LALPLLPQVL PGPIKENETV KEFGSQVPVC KPMSSIHNIE 240 EQKDTHLVSL ASGDNSEEQS CPSPATVSGC SENHTPDSAV KKEPSNVLGY YNGITLPHPH 300 GPALVFPWSP GWNSIAVMAA AQCSTEPIQG LENVKHGLPP WAPPLMMAAP GICTPVVSFP 360 MMPPPLWSCI PGWPNGMWSS PCPGSNGPPN KITCSEDNSP TLGKHSREAD LQEEDRENNV 420 QVPKTLRIDD PAETTKTSVR DTLGIKPDEK GMFEPFQMKV LKNDKTPESP QALQANPAAF 480 SRSQSFQERT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MAALRDRGDA AIKLFGRTIP LLDAAAEGGI AAPSSPPKRP PVVTKLGNDA NSNDVMPCVS  60
NKLLNVEATP FCSKNREQND QAISKHGVEV RTGFKSEEIK TGSDGSGQDK VLKKPDIIVP  120
CPRCNSMETK FCYFNNYNVS QPRHFCRNCQ RYWTAGGNIR NVPVGSGRRR NKHASHFRHA  180
MMSCDANIAA PGDVSNEIHH LALPLLPQVL PGPIKENETV KEFGSQVPVC KPMSSIHNIE  240
EQKDTHLVSL ASGDNSEEQS CPSPATVSGC SENHTPDSAV KKEPSNVLGY YNGITLPHPH  300
GPALVFPWSP GWNSIAVMAA AQCSTEPIQG LENVKHGLPP WAPPLMMAAP GICTPVVSFP  360
MMPPPLWSCI PGWPNGMWSS PCPGSNGPPN KITCSEDNSP TLGKHSREAD LQEEDRENNV  420
QVPKTLRIDD PAETTKTSVR DTLGIKPDEK GMFEPFQMKV LKNDKTPESP QALQANPAAF  480
SRSQSFQERT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	0.0	cyclic dof factor 3-like
TrEMBL	M8C968	0.0	M8C968_AEGTA; Dof zinc finger protein
STRING	EMT11673	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	8e-58	cycling DOF factor 3