PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11484
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92395.4 Da    PI: 5.9216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-2198153156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k
  EMT11484  98 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 153
               678899***********************************************999 PP
2START166.81.5e-523125771206
               HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGG................... CS
     START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddke................... 70 
               ela +a++elvk+a+ ++p+Wv+ s      es+n +e+l + +   +     + +ea+r+sg+v+ + ++ lve+l+d  +                   
  EMT11484 312 ELAISAMDELVKMAQTDDPLWVTGSpgfpdkESLNFEEYLHSSQHCIGmkpvgFVSEASRESGLVIIDnSVALVETLMDEVQahtfpllifvpiykrclyy 412
               57889******************999**99999999***9999666659999***********998651669*********9******************* PP

               .............CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTS CS
     START  71 .............qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssv 142
                            +W+ ++     ka++le +s+g      gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d   ++++       s 
  EMT11484 413 ayytdvspfisqrRWSDMFScmiaKATILEEVSNGiggsrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsaatsAGSN 513
               *************9*****9*****************************************************************8887777666544567 PP

               EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                ++++lpSg+++++++ng++kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+
  EMT11484 514 LKCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 577
               9*************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2278157IPR009057Homeodomain-like
SuperFamilySSF466891.3E-2179155IPR009057Homeodomain-like
PROSITE profilePS5007118.12395155IPR001356Homeobox domain
SMARTSM003898.9E-2096159IPR001356Homeobox domain
CDDcd000863.89E-1997155No hitNo description
PfamPF000466.5E-1998153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084843.422303580IPR002913START domain
SuperFamilySSF559612.47E-23304389No hitNo description
CDDcd088751.39E-103307576No hitNo description
SMARTSM002343.1E-34312577IPR002913START domain
PfamPF018527.3E-40425577IPR002913START domain
SuperFamilySSF559612.47E-23435577No hitNo description
SuperFamilySSF559612.01E-17606844No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MSFGGLFDGG GGGGGMQFPY AGAFSSSPAL SLGLDNAGAR DGGIGGRMFA DGAGGAMARD  60
AEAQNDSRSG SDHLDAISGV GDDDDDAEPS GSNPRKRKKR YHRHTPQQIQ ELEALFKECP  120
HPDEKQRAEL SKRLSLDARQ VKFWFQNRRT QMKTQLERHE NALLKQENEK LRTENLTIRE  180
AMRTPMCGGC GSPAMLGEVS LEEQHLRIEN ARLKDELNRV CTLATKFLGK PVSLLSPLQL  240
QPHLSMPLPN SSLELAVGGI GGIGSMQPSM HGMMSEYAGG ASSSMGTVIT PARATGPALA  300
SMVDIDRSVF LELAISAMDE LVKMAQTDDP LWVTGSPGFP DKESLNFEEY LHSSQHCIGM  360
KPVGFVSEAS RESGLVIIDN SVALVETLMD EVQAHTFPLL IFVPIYKRCL YYAYYTDVSP  420
FISQRRWSDM FSCMIAKATI LEEVSNGIGG SRNGALLLMK AELQVLSPLV PIREVIFLRF  480
CKQLAEGAWA VVDVSIDGLL SNQNSAATSA GSNLKCRRLP SGCVMQDTPN GYCKVTWVEH  540
TEYDEASVHQ FYRPLLRSGL AFGASRWLAT LQRQCECLAI LMSSATVSPN EPTAISQEGK  600
RSMLKLARRM TENFCAGVSA SSAREWSKLD GATGSIAEDV RVMARKSVSE PGEPPGVVLS  660
AATSVWVPIA PEKLFDFLRD EQLRAEWDIL SNGGPMQEMA RIAKGHQNGN SVSLLRASLT  720
LNWLKRFSQN GDMSRAMSAN QSSMLILQET CTDASGSIVV YAPVDIPAMQ LVMNGGDSTY  780
VALLPSGFAI LPDGPSIGSE HKTGGSLLTV AFQILVNSQP TAKLTVESVE TVNNLISCTI  840
KKIKTALQCA TPEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399PRKRKKR
29498RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629190.0AK362919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011D04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178635.10.0homeobox-leucine zipper protein ROC5-like
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLM8BXC90.0M8BXC9_AEGTA; Homeobox-leucine zipper protein ROC5
STRINGEMT114840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]