PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 17819.9 Da PI: 9.0282 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.1e-06 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H EMT11470 51 YTCGYCKREFRSAQALGGHMNVH 73 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.69E-6 | 49 | 78 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.8E-7 | 51 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MESRGSARGG DRGHLDHHRQ VLLLRPAAAW SYASAGGGAS CPAQRSPSSS YTCGYCKREF 60 RSAQALGGHM NVHRRERARI RHYYCSAYPA APAPAPAAVH RDWVPNLNFS PPRCPSGDYG 120 GTSTATPAVY SFFSTTAAAE AAKAALVVDL ELGVGGGGGG LDLELRLGCS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ577365 | 1e-101 | AJ577365.1 Triticum aestivum partial mRNA for putative Zn-finger protein C2H2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165383.1 | 1e-120 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | M8BCS0 | 1e-119 | M8BCS0_AEGTA; Transcriptional regulator SUPERMAN | ||||
STRING | EMT11470 | 1e-120 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 4e-15 | C2H2 family protein |