PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11444
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 363aa    MW: 40421.4 Da    PI: 6.0445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11444genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d+++++G g+W++ ++  g++R++k+c++rw +yl
         EMT11444 14 KGPWTPEEDQKLTDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.42.4e-1667144148
                      TSSS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++  lG++                               +W++Ia++++ gRt++++k++w+++l
         EMT11444  67 RGKFTPEEEQTILQLHSVLGNKygtpinllynlqkriyvvlllthrnccadqtRWSAIAKHLP-GRTDNEIKNFWNTHL 144
                      89*************************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.499965IPR017930Myb domain
SMARTSM007179.9E-161363IPR001005SANT/Myb domain
PfamPF002491.7E-171461IPR001005SANT/Myb domain
SuperFamilySSF466896.31E-251589IPR009057Homeodomain-like
CDDcd001671.48E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.5E-256587IPR009057Homeodomain-like
PROSITE profilePS5129411.57566148IPR017930Myb domain
SMARTSM007171.3E-1466146IPR001005SANT/Myb domain
PfamPF002493.8E-1467144IPR001005SANT/Myb domain
CDDcd001677.90E-1069144No hitNo description
SuperFamilySSF466893.02E-9117153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-25120149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLTDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TPEEEQTILQ LHSVLGNKYG TPINLLYNLQ KRIYVVLLLT HRNCCADQTR  120
WSAIAKHLPG RTDNEIKNFW NTHLKKKLIQ MGFDPMTHRP RTDFFAALPQ LIALANLRQL  180
VEQRPWDDQS ANQLQADAVQ AAKLEYLQCL LQSAAAIATS PSSSSINTIP TDLEQIGLLS  240
PSQMSSLSSL SSPRILEGIN GQDLVTGQVS DIQIPSSSFF EHEQPIINGT NQNSDYSANS  300
GEGENSTQKP LLLSEDSLPP LADFSISNLG DACSTSSCHA EGNSTQLPIW SDSFYDEFMS  360
EFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121485108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171818.10.0transcription factor MYB39-like
SwissprotQ9S9Z24e-97MYB93_ARATH; Transcription factor MYB93
TrEMBLM8BX900.0M8BX90_AEGTA; Transcription factor MYB39
STRINGEMT114440.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-97myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]