PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11439
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24129.6 Da    PI: 9.529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11439genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-22957149
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  EMT11439  9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
              79*********************************************99 PP
2K-box31.66.9e-1272169198
     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
               y++++++++++   ++ + el+k+ k  + L++e+R +  +d e+ ++  L  Le++Le ++ k+Rs K++ +  ++++l ++ +  q e   L  kl
  EMT11439  72 YEAATHTKVWSDIRQERRAELEKVAKMCDLLEKELRFMTVDDGEQYTVPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENMIRGKQAERYGLCDKL 169
               566778889***********************************************************************999998888887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.146161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26294IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-1384169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.26585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP  60
TVPSVKGFVE RYEAATHTKV WSDIRQERRA ELEKVAKMCD LLEKELRFMT VDDGEQYTVP  120
SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKVVEG  180
GSTSLNNGLD LKLGRFSQSI QNLVTVQDST RNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-14190195MEF2 CHIMERA
6byy_B2e-14190195MEF2 CHIMERA
6byy_C2e-14190195MEF2 CHIMERA
6byy_D2e-14190195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028820.0AM502882.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM16 (WM16 gene).
GenBankDQ5123600.0DQ512360.1 Triticum aestivum MADS-box transcription factor TaAGL14 (AGL14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182424.11e-142MADS-box transcription factor 32
SwissprotQ8S1511e-121MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLM8BX851e-156M8BX85_AEGTA; MADS-box transcription factor 32
STRINGEMT114391e-157(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-23MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]