PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARR-B | ||||||||
Protein Properties | Length: 651aa MW: 71470.8 Da PI: 6.8993 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.6 | 1.4e-28 | 215 | 268 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl EMT11380 215 KPRVVWSAELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 268 79*******************.********************************8 PP | |||||||
2 | Response_reg | 65 | 3.5e-22 | 25 | 141 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTC.......EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegy.......eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l++ +y + +++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge + +l+ EMT11380 25 VLAVDDDPVCLKVLEVLLRRCQYhgqsllaLHLTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVLK 120 799****************55543323333477899999999999998889********************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel++ EMT11380 121 GITHGACDYLLKPVRIEELRN 141 *******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.9E-166 | 1 | 609 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.08E-30 | 22 | 157 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-37 | 22 | 183 | No hit | No description |
SMART | SM00448 | 4.1E-26 | 23 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 38.924 | 24 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.0E-19 | 25 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.48E-24 | 26 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 212 | 273 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.182 | 212 | 271 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-20 | 213 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-26 | 215 | 268 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-7 | 217 | 267 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MMMEARKGLM ERERERDQFP VGMRVLAVDD DPVCLKVLEV LLRRCQYHGQ SLLALHLTTT 60 NQAATALRLL RENKDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKSVLK 120 GITHGACDYL LKPVRIEELR NVWQHVVRRK FSNREPNNLD FCKEISKDSY HRLGQATCDR 180 SSDQSNRASK KRKELHSEEE DEGEDNDDAS AASKKPRVVW SAELHRKFVA AVNQLGIDKA 240 VPKRILELMN VEKLTRENVA SHLQKYRLYL RRLSAVASQQ ASIAAAFGGR DPFEGLHSYH 300 QPFAPSLNPH GLLSGAGAAT FELQDFVPSK AIQCASSIGA VSHCAGDTNK FNIVSLQDNQ 360 QADLTQGLTT SSLGQPRLQQ TWIHQETNDL CSVFSGGAQA NTMSGTFQRI TSSSLAPEDL 420 LECTPHIKLG AHPSIGISQQ GALPISDGFS VDKLPLHIPF DGADTGFLAR EPKMDQKGIF 480 SERMNVRVCP SESLIAANNA KCGASSSGST MLLPPDTERH SEYLQFGAAS NSRHRMDGVR 540 EDQCLNNADF SYDGGAIVPE QTHMDDLGIP KLQGGFNSSS CNFDGLLNSI IKVKNKNEAK 600 GLFGVSPLQN STSGAGVASA ENKGAGKHPL RRSSYFLEPS DYRTGPKCHM G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-24 | 212 | 274 | 2 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369966 | 0.0 | AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175009.1 | 0.0 | two-component response regulator ORR22-like isoform X1 | ||||
Swissprot | B8B3I4 | 0.0 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
TrEMBL | M8BCJ1 | 0.0 | M8BCJ1_AEGTA; Two-component response regulator | ||||
STRING | EMT11380 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-101 | response regulator 12 |