PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT11284

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

SRS

Protein Properties

Length: 245aa MW: 24925 Da PI: 8.2149

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT11284	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.7	2.2e-70	11	171	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a s+ a+++++a sk++r l s++q+++s t++s+a+++++ +t EMT11284 11 GSGTTTCQDCGNQAKKDCTHSRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLGGSA-SSPATASTAAGSKKPRLL-SSQQATTSYTSTSNATTPRSYDT 109 57999********************************************8777666.555666788999999986.788889999999***9999 PP DUF702 103 ss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s lP++v+++avfrcvrv+svddge+e+aYq++v+i+GhvfkG+LydqG+++ EMT11284 110 TSshqdasfrgnLPRQVRAPAVFRCVRVTSVDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 171 9999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-63	14	170	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-29	122	169	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MLDTGGDGSS GSGTTTCQDC GNQAKKDCTH SRCRTCCKSR GFDCSTHVKS TWVPAARRRE 60 RQHLGGSASS PATASTAAGS KKPRLLSSQQ ATTSYTSTSN ATTPRSYDTT SSHQDASFRG 120 NLPRQVRAPA VFRCVRVTSV DDGEDEYAYQ ATVTINGHVF KGFLYDQGVD DGRASNDIDS 180 STGGAVPNMS ELHLGGGGNA ARGGGGSSSM APSDMYGGVG AGGAGGGGGG QHILGGGSSY 240 GNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355643	0.0	AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22.
GenBank	AK363554	0.0	AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182901.1	1e-177	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-65	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	M8BWV6	1e-176	M8BWV6_AEGTA; Uncharacterized protein
STRING	EMT11284	1e-177	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	8e-54	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]