PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 36155.9 Da PI: 8.1296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.2 | 1.5e-11 | 102 | 149 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 s+++GV+ +k g+W+A+I +k ++lg ++t+ +Aaka+++a++ EMT11237 102 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAALD 149 789*******.7******77733....25**********77*********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.295 | 1 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-4 | 32 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-8 | 38 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-6 | 38 | 67 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 8.5E-16 | 102 | 160 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.21E-11 | 102 | 160 | No hit | No description |
Pfam | PF00847 | 3.9E-6 | 102 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 103 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.658 | 103 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-25 | 103 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-5 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-5 | 142 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MATAKLPRSL RKPSSLDLAL ISISRLCFLD LQGLREAGGF DTAQAAARAY DQAAIKFRGV 60 EADINFVLDD YKEDIGKMSV LSKEELVQVL RRQGAGFVRG SSRFRGVTLH KCGKWEARIG 120 QLMGKKFVYL GLYDTEMDAA KAYDKAALDC SGEEAVTNFE PKAAVTCDSN LGLQAWDGEP 180 DLELSLGCSG GGDPSMVTGG KTLHTAATPG SRRTSLTFEM PEEEEAAAPW RPGRNRSIWM 240 RPSPTSITPA LRCPDGDHRP TIPRSSMLQM GQIGGAGRAE PHMLGWPTGA GVDRWQPYAA 300 EAAAAASSGF PPAPGLGGVQ RQNHHRPGSR EQLWR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 0.0 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151062.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8B0I8 | 1e-90 | AP24_ORYSI; APETALA2-like protein 4 | ||||
TrEMBL | M8B3D3 | 0.0 | M8B3D3_AEGTA; Floral homeotic protein APETALA 2 | ||||
STRING | EMT11237 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-48 | AP2 family protein |