PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10917
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 1147aa    MW: 126579 Da    PI: 4.9891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10917genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001310371062123
                EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                ++C+   C+++F +k +L+ H r+ +
  EMT10917 1037 FQCEidFCDMTFESKADLRAHERNiC 1062
                89********************9877 PP
2zf-C2H210.90.001410901114123
                EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                +kCp   Cg++F+     + Hir+H
  EMT10917 1090 FKCPweGCGMTFKWLWAQTEHIRVH 1114
                89*********************99 PP
3zf-C2H214.10.0001411201146123
                EEET..TTTEEESSHHHHHHHHHH..T CS
   zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                y+C+  dCg++F+  s++ rH r+  H
  EMT10917 1120 YECSvvDCGQTFRYVSDYSRHRRKfnH 1146
                89*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118432.4361137IPR003347JmjC domain
SuperFamilySSF511972.58E-231133No hitNo description
SMARTSM005581.5E-221137IPR003347JmjC domain
PfamPF023732.9E-361120IPR003347JmjC domain
SMARTSM003551410371059IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.75710601089IPR007087Zinc finger, C2H2
SMARTSM00355510601084IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010621084IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-610661090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.65E-1610711129No hitNo description
PROSITE profilePS5015713.02710901119IPR007087Zinc finger, C2H2
SMARTSM003552.8E-410901114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-1210911114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010921114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-1011151142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06711201146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.57211201147IPR007087Zinc finger, C2H2
PROSITE patternPS00028011221146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0019344Biological Processcysteine biosynthetic process
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0043687Biological Processpost-translational protein modification
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MVYIGMLFSW FAWHIEDHEL HSLNFLHTGA PKTWYAVPGD RAAELEEVIR VHGYGGNPDR  60
LASLAVLGEK TTLMSPEVIV ASGLPCCRLV QHPGEFVVTF PRAYHVGFSH GFNCGEAANF  120
ATPQWLKFAK EAAVRRAVMN YLPMLSHQQL LYLLAVSFIS SIESVPKENS SSDDIASRAG  180
VQPKCMSMDS KSSDAMSTSE AQKLDTDTDD DGDLPFDLSI DSGSLTCVAC GILGFPFMAI  240
LQPSKKALED MSLVDVERFK LNCEKENHSN AISCSPDDGN SGHPVIAKRP SSPVAESNFS  300
HQNAESDKDG VGLDGPLPPH NNSSHSCSSE NTLNPCINTE TTETKIPSAR FGIEFSKQTG  360
RGDIDAQATE SCGNTVDWNI SSAFVRPRIF CLQHALEIEE LLEGKGGVHA LIICHADYTK  420
LKALAISIAE EIEFQFDCKD VPLANASKSD LHLINISIDD EGYKEDERDW TTQMGLNMKY  480
FAKLRKETPG CQEQPPLSFW KRLDISDKPS PISVVPNLKW LCRRARTPYR VVGYAASRNA  540
TVGPDVVSPA VTKAEMGTSG NAYENAKEQQ TAEQDAPLEP SRLQEADDVA DMHTCSEDID  600
QDMHCLIGSK RQRTAEQDAP LQPSGLQEAD DVVDMHTCSV DNDQAMHRLI GIPVAVAEYP  660
MMHQVCEGTV SVSTCELDDL DSPGVSDDFT AEQKSVQSDE LTSSVAMSVQ QFLVDESMIA  720
EDSSNHENLG CYNVTSECKD KQLQVQQEQE NIELCNNAGR NLATVVQVDS SHFRDKAVNL  780
KSAIPTESQH EYPRRDAIVL EGMQAALTTV VSEENRNSVH TELDSLGILL GALAEESILA  840
DVPGKDEVDD ASLTLMTLAS IDQSAGDVAH NEVIETSSSS VGASLSCRGR TLTNLASDGS  900
LRIQNAEIQN KQENAEEVGA WNCQGLKNSR GILDSSANSL SETGKSSGTP NTYQPDILSR  960
SIGSSKRTSI ICYVRRKRKQ KRKRESQSVG SFARAPCERL RPRTKPAVIE EPAEQIETAK  1020
PSAAATKGKR SKVVELFQCE IDFCDMTFES KADLRAHERN ICTDESCGKR FQSHKYLKRH  1080
QCVHRDERPF KCPWEGCGMT FKWLWAQTEH IRVHTGERPY ECSVVDCGQT FRYVSDYSRH  1140
RRKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-471037114623132Lysine-specific demethylase REF6
6a58_A4e-471037114623132Lysine-specific demethylase REF6
6a59_A4e-471037114623132Lysine-specific demethylase REF6
6ip0_A1e-441151192346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-441151192346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1973980VRRKRKQK
2977984RKQKRKRE
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157215.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLM8B2F10.0M8B2F1_AEGTA; Lysine-specific demethylase lid
STRINGEMT109170.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.15e-85C2H2 family protein