PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10914
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 30705 Da    PI: 7.3257
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10914genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-254090151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              ++ien++ rqvtfskR+ g++KKA EL vLCda+v v++fs+tg+ly+ys+
  EMT10914 40 EKIENTTSRQVTFSKRKGGLFKKARELGVLCDAQVGVLLFSNTGRLYDYSN 90
              57***********************************************95 PP
2K-box79.11.1e-26113202998
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                ++a+a+ +q e ++L+++++nLq+++R+llG+ L+ L l++L  Le+qLe+sl +iR  K++l++++iee  kk + +++en +L+kkl
  EMT10914 113 SASAEAKFWQAEGERLRQQLHNLQENNRQLLGQHLSGLGLEDLSGLEKQLETSLHNIRLAKDQLMIDEIEEFNKKGNLVHQENVELHKKL 202
               678999**********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.093292IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-333291IPR002100Transcription factor, MADS-box
CDDcd002653.71E-3634110No hitNo description
SuperFamilySSF554554.84E-2834114IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-243454IPR002100Transcription factor, MADS-box
PfamPF003193.6E-244188IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-245469IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-246990IPR002100Transcription factor, MADS-box
PfamPF014867.4E-25115202IPR002487Transcription factor, K-box
PROSITE profilePS5129714.465118208IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MENVVAKILL PTPASVLAPC LVNHLNLRWY VMVRGKTVIE KIENTTSRQV TFSKRKGGLF  60
KKARELGVLC DAQVGVLLFS NTGRLYDYSN SNTGMKSLLE RYQQVKEGQQ FMSASAEAKF  120
WQAEGERLRQ QLHNLQENNR QLLGQHLSGL GLEDLSGLEK QLETSLHNIR LAKDQLMIDE  180
IEEFNKKGNL VHQENVELHK KLNIIHQENI YLQTKLNGQP EANGVITSSS SHCSIAARDG  240
ANLVRLELSQ PHHAERGEEP ESPTLGYGEI CVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3714420.0AK371442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2134C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165070.11e-171MADS-box transcription factor 23-like
SwissprotQ6EP493e-75MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM8BVU40.0M8BVU4_AEGTA; MADS-box transcription factor 27
STRINGEMT109140.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-64AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]