PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GATA | ||||||||
Protein Properties | Length: 232aa MW: 24978.9 Da PI: 10.1693 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 8e-17 | 110 | 144 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ k EMT10906 110 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 144 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 10.417 | 57 | 99 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-10 | 57 | 88 | IPR010402 | CCT domain |
SMART | SM00401 | 6.3E-7 | 104 | 157 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-11 | 106 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 108 | 146 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.63E-14 | 109 | 150 | No hit | No description |
Pfam | PF00320 | 2.0E-14 | 110 | 144 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 110 | 137 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTPNRLEDAQ SSKVQAVLLL LGTGEIPPGL SAMVLPSQRE NRGYEDLLQR TDIPAKRVAS 60 LIRFREKRKG RNFDKQIRYA VRKEVAHRVD AARHGWLEAR LGNIVVPMRC QNCGTSEKMT 120 PAMRRGPAGP RTLCNACGLM WANKFSVSPL LLPVVMEGTL RSCSKAKVEA PMPAIEQCNA 180 AVAQCQTGTD VKALPAPNNY GVAPSKGEAM DNSVTANVTA AATGGAPKAQ SE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354746 | 1e-107 | AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175747.1 | 1e-124 | GATA transcription factor 18-like isoform X4 | ||||
Swissprot | Q10F25 | 2e-81 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | M8BA77 | 1e-170 | M8BA77_AEGTA; GATA transcription factor 27 | ||||
STRING | EMT10906 | 1e-171 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 8e-42 | ZIM-like 1 |
Publications ? help Back to Top | |||
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