PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21169.9 Da PI: 6.0889 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.2 | 1.6e-16 | 10 | 57 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE..EEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaeva..viifsstgkl 46 kri ++ r vtf+kRr ++lKKA L vLCd +v+ +++fsstgk+ EMT10885 10 KRIVDDASRRVTFCKRRGTLLKKARGLAVLCDDDVSlgLVVFSSTGKV 57 789999*************************99998446*******98 PP | |||||||
2 | K-box | 32.7 | 3e-12 | 88 | 163 | 5 | 77 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGed.L..esLslkeLqqLeqqLekslkkiRskKnellleqi 77 ++++++ ++++l e+a+L++ei+ L+ ++R+ Ge+ L + + eL+ L++++ ++l k+R +K +ll e++ EMT10885 88 QDTNQDGDHHQQLLAEVARLRQEIDHLEGSLRRQTGEEdLlsSGVTAAELHDLQHHVGSALGKVRHRKVHLLEEEM 163 556688899***************************75453345899*************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.984 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-19 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-19 | 4 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-15 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.3E-12 | 93 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.76 | 97 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRRGKLEVK RIVDDASRRV TFCKRRGTLL KKARGLAVLC DDDVSLGLVV FSSTGKVAGD 60 YCSPNTSWSD LIQRYEREST PSTQLQVQDT NQDGDHHQQL LAEVARLRQE IDHLEGSLRR 120 QTGEEDLLSS GVTAAELHDL QHHVGSALGK VRHRKVHLLE EEMLLATAAF LEVEVDMDME 180 ASTSLQPTLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177037.1 | 1e-137 | MADS-box transcription factor 30-like | ||||
Swissprot | Q655V4 | 1e-35 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | M8BB61 | 1e-135 | M8BB61_AEGTA; MADS-box transcription factor 30 | ||||
STRING | EMT10885 | 1e-136 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 5e-26 | MIKC_MADS family protein |