PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23728.4 Da PI: 6.6287 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.5 | 1.9e-19 | 10 | 58 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE..EEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaeva..viifsstgkly 47 kri+++ rqvtf+kRr ++lKKA EL vLCd +v+ +++fsstgkl EMT10884 10 KRIDDDGLRQVTFCKRRGTLLKKACELAVLCDDDVSlgLVVFSSTGKLA 58 79*****************************99998446********95 PP | |||||||
2 | K-box | 55.6 | 2.3e-19 | 98 | 186 | 8 | 97 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++++++ +a+L++ei L+ ++R+ GedL s + eL+ Leqq+e++l k+R++K+ell +q+ el +k ++l++en+aL ++ EMT10884 98 DDDHHQQQQVLVGVARLRQEIGHLEASLRRQTGEDLPS-GVAELHDLEQQVESALGKVRQTKDELLNQQLGELHRKVQNLEDENNALLHM 186 34556667777899**********************88.9**********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-21 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.315 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-11 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-19 | 4 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-16 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-11 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.9E-19 | 99 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.074 | 104 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRRGKLEVK RIDDDGLRQV TFCKRRGTLL KKACELAVLC DDDVSLGLVV FSSTGKLAGD 60 YCSPNTSWSE LIQRYERERE STSSTQLHVQ GRITNQNDDD HHQQQQVLVG VARLRQEIGH 120 LEASLRRQTG EDLPSGVAEL HDLEQQVESA LGKVRQTKDE LLNQQLGELH RKVQNLEDEN 180 NALLHMNADR QDRAAARGGP RQNSDWGRII |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177039.1 | 1e-136 | MADS-box transcription factor 29-like | ||||
TrEMBL | M8BVR8 | 1e-151 | M8BVR8_AEGTA; MADS-box transcription factor 29 | ||||
STRING | EMT10884 | 1e-151 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-29 | MIKC_MADS family protein |