PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 35599 Da PI: 8.4108 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.9e-07 | 100 | 123 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +f+ t C++Gd+C+F+H EMT10784 100 KSKPCIRFFSTAGCRFGDNCRFIH 123 7789******************** PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 297 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +far G C +Gd C+FaHg+ EMT10784 297 FKTKLCGHFAR-GCCTHGDGCRFAHGK 322 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.9 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-7 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.8E-14 | 191 | 267 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.2E-14 | 196 | 263 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.1E-13 | 196 | 266 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.053 | 197 | 261 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.12E-13 | 199 | 260 | No hit | No description |
Pfam | PF00013 | 1.1E-12 | 199 | 262 | IPR004088 | K Homology domain, type 1 |
SMART | SM00356 | 3.0E-4 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 296 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.572 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-11 | 297 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MSSAPPDDGV VPPSVTMPRE GQRIKYSREL LLAVASSDAC KVLPAGVDLS KHPDDVKLWV 60 RAETWAARSV GGAAPGRQGK SELPQRAREP ESFQAGVGSK SKPCIRFFST AGCRFGDNCR 120 FIHYIPGGYV AVEKLGILSG AAPALPPAQG VENPGKHLSM DNSTQPPTEP TPTGDHALQA 180 QTAPDPRKEA VASFGASSTA KISVDASLTG AIIGRGGATI KQISRASGAR LRVRDHDWDA 240 DLKNVELEGT FDQIKNAYDM AMEQLIHVVN HDGGGAPSPA AGANTTSHGG GWQLDSFKTK 300 LCGHFARGCC THGDGCRFAH GKSELRRPVP APRDPGGW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164519.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-71 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M8BVI4 | 0.0 | M8BVI4_AEGTA; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | EMT10784 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25139 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-47 | C3H family protein |