PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09996
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 298aa    MW: 32579.1 Da    PI: 10.4344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.33.1e-2883183190
               EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
               f+k+ tpsdv+k++rlv+pk++ae+h                   +++ l + d  g++W+++++y+++s++yvlt GW++Fvk++gL +gD v F+++ +
  EMT09996  83 FDKTATPSDVGKLNRLVIPKQHAEKHfplqlpsssaavP---GecKGVLLNFDDAVGKTWRFRYSYWNSSQSYVLTMGWSRFVKEKGLHAGDAVGFYRSAS 180
               89***************************8887776652...1448899************************************************7655 PP

               SEE CS
        B3  88 sef 90 
                + 
  EMT09996 181 GNN 183
               444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-3874198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2780191IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-2381178No hitNo description
PfamPF023625.0E-2583186IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77483193IPR003340B3 DNA binding domain
SMARTSM010191.2E-1683193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTRYVSCQTS RRFFFWALVT ILVRHSTTRL HKSGDKACSG AMLEESIARG FFMNLGASIN  60
ISPASSAPSA AAPSAATRRE HLFDKTATPS DVGKLNRLVI PKQHAEKHFP LQLPSSSAAV  120
PGECKGVLLN FDDAVGKTWR FRYSYWNSSQ SYVLTMGWSR FVKEKGLHAG DAVGFYRSAS  180
GNNQLFIDCK LRSKTTTTTT TFLNAVAAPS AAPVTRTVRL FGVDLPTAPA PEREEYGMTK  240
TNKKSMDASV AAPTPVHAVW KKRCVDFALT YRHATTSQCP RSRDQLEGVQ GAGSTFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-488019311118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719410.0AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159696.11e-149AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H41e-74Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLM8B7K40.0M8B7K4_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT099960.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2516134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-55related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]