PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09779
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 830aa    MW: 93003 Da    PI: 6.4833
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09779genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17e-23160261199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v
  EMT09779 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRV 256
               99*****************************7555544..58************************************************..449999*** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +v+r+
  EMT09779 257 GVRRA 261
               **996 PP
2Auxin_resp111.21.1e-36286367183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
    EMT09779 286 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 367
                 89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-40153289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39153275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-19158260No hitNo description
SMARTSM010199.5E-22160262IPR003340B3 DNA binding domain
PfamPF023621.0E-20160261IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702160262IPR003340B3 DNA binding domain
PfamPF065071.3E-33286367IPR010525Auxin response factor
PfamPF023091.7E-12692793IPR033389AUX/IAA domain
SuperFamilySSF542771.67E-12703786No hitNo description
PROSITE profilePS5174524.728709802IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MVIFEREEGR GEGAWRACGG RAGATDWLAG WRVPAGNEWG WVVKSCPVGD PLYDELWHAC  60
AGPLVTVPRV GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV INVELKAEAD  120
TDEVYAQVML MPEPEQNEMA VDKSTSTTGA TPPRPAVRSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MTQSPPTQEL VAKDLHGMDW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE SGELRVGVRR AMRQLSNVPS SVISSHSMHL GVLATAWHAI NTKSMFTVYY  300
KPRTSPSEFI IPYDQYMESV KNNYSIGMRF RMRFEGEEAP EQRFTGTIVG SENLDQLWPE  360
SNWRSLKVRW DEPSTIPRPD RVSPWKIEPA SSPPVNPLPL SRVKRPRPNV PPVSPESSVL  420
TKEGATKIDM DSAQAQQRNQ NSMVLQGQEH MTLRTNNLTG SNESDATVQK PMMWSPSPNI  480
GKNHASAFQQ RPSMDNWMQL GRCDASSGAQ SFGDSQGFFM QTFDEAPNRH GSFKNQFQDH  540
SSARHFSDPY TKMQTEANEF HFWNSQSTVY GNPRDQSQGF RFEEHPSNWL RQQQFSPVEQ  600
PRVIRPHASI APVDLEKTRE GSGFKIFGFK VDTTSAPSNH LSSTTAAIHE PVLQTQASAS  660
LTQLQHAHAD CIPELSVSTA GTTENEKSIQ QTPHSSKDVQ SKSHGASTRS CTKVHKQGVA  720
LGRSVDLSKF GDYDELTAEL DRMFEFDGEL MSSNKDWQIV YTDPEGDMML VGDDPWEEFC  780
NIVRKIFIYT KEEVQKMNSK SSTPRKEEGS ADADGANEKA HLATSSHLDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1674839215357Auxin response factor 1
4ldw_A1e-1674839215357Auxin response factor 1
4ldw_B1e-1674839215357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403407KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLM8BSK70.0M8BSK7_AEGTA; Auxin response factor
STRINGEMT097790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]