PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 31353.7 Da PI: 5.7866 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl EMT09773 19 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 66 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ EMT09773 72 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 116 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 14 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.843 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-28 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-11 | 22 | 66 | No hit | No description |
PROSITE profile | PS51294 | 24.517 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 70 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 72 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-10 | 74 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRHAGTGGG GGVQQKLRKG LWSPEEDEKL YNHIIRYGVG CWSSVPKLAG LQRCGKSCRL 60 RWINYLRPDL KRGSFSQQEE DAIVGLHEIL GNRWSQIASH LPGRTDNEIK NFWNSCLKKK 120 LRQRGIDPST HKPISGVAGL EPDQASKDER PQAADGLALK QQQQQQQVFD PFPVADTFGA 180 GFDGAGMPLY DHLGGKDAAG FVDYSSVLDV SENLGYGESS SNSSNWNSAP EASNALEGEA 240 LHWASESKVE PFAGYAGDED DKFALPCHGQ QEHSMAHFDF NLEYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 17 | 121 | 5 | 108 | B-MYB |
1h8a_C | 8e-28 | 17 | 121 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372534 | 0.0 | AK372534.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3004I06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199496.1 | 0.0 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-104 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3B6GUY4 | 0.0 | A0A3B6GUY4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453FA90 | 0.0 | A0A453FA90_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8C3T5 | 0.0 | M8C3T5_AEGTA; Myb-related protein Hv33 | ||||
STRING | EMT09773 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 8e-74 | myb domain protein 86 |