PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 45246.4 Da PI: 7.2668 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H EMT09717 131 YSCSFCGREFRSAQALGGHMNVH 153 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-6 | 128 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 129 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.002 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.9E-6 | 131 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.217 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDPSFMISSF IAPTQHGIDH QLPGYRTPGA GLDEAVYNKT VTLPVTNWMC EEKIGPGPTR 60 VLQTTKAKYW MITRRKQGDQ KAPAVFSTPH IAVGSGGGTS SATYYESWEE RAFAQDSAGS 120 LGGCIWPPRS YSCSFCGREF RSAQALGGHM NVHRRDRARL KLSGMVEDGG GVDVHGMPLH 180 QGYMIQPLPC PPPRPSAPST EANPNPVRSF LSDPGKSLVD AATARTIWGK QVLAAPLASP 240 SDTQEHGEKD VFLRDAEVRS EQELRAGAGE LKLSLLGRRT RSAFEDDDKE DDEKIVHLCR 300 KRRRIDLEAT EFVLSSSSSE HLQRDDPRDD GDDDNRRVKE VELKIKSLLA YMCEIQCHFS 360 CVWLIFVHLV VSSDCIYVQA FCKNPALLEV ALACNPLRKW QKCFRLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 7e-12 | 126 | 153 | 2 | 29 | superman protein |
2l1o_A | 7e-12 | 126 | 153 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 303 | RKRRR |
2 | 300 | 304 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249438 | 0.0 | AK249438.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf32c06, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201188.1 | 0.0 | uncharacterized protein LOC109787040 | ||||
TrEMBL | M8AZ15 | 0.0 | M8AZ15_AEGTA; Putative transcriptional regulator RABBIT EARS | ||||
STRING | EMT09717 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 4e-25 | C2H2 family protein |