PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09606
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 351aa    MW: 39459.3 Da    PI: 7.8319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09606genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-17961401256
               HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  EMT09606  96 VRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 140
               689*****************************************9 PP
2Homeobox27.84.2e-091701913556
               HHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  35 kklgLterqVkvWFqNrRakek 56 
               kkl+ + rqV +WFqNrRa++k
  EMT09606 170 KKLQSEPRQVAIWFQNRRARWK 191
               5788899**************9 PP
3HD-ZIP_I/II114.18.7e-37961741189
  HD-ZIP_I/II  11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  v++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++
     EMT09606  96 VRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQS 174
                  89***************************************************************************96 PP
4HD-ZIP_I/II74.81.5e-241702273491
  HD-ZIP_I/II  34 reLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ++L+ +prqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
     EMT09606 170 KKLQSEPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 227
                  689999*************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-1093146IPR001356Homeobox domain
PROSITE profilePS5007115.46795142IPR001356Homeobox domain
CDDcd000861.17E-1296143No hitNo description
Gene3DG3DSA:1.10.10.606.6E-1896149IPR009057Homeodomain-like
SuperFamilySSF466892.21E-1696144IPR009057Homeodomain-like
PfamPF000462.7E-1496140IPR001356Homeobox domain
PRINTSPR000311.2E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5122138IPR000047Helix-turn-helix motif
PfamPF021834.7E-13142175IPR003106Leucine zipper, homeobox-associated
SMARTSM003890.32149197IPR001356Homeobox domain
CDDcd000865.13E-5170194No hitNo description
PfamPF000462.0E-6170191IPR001356Homeobox domain
PROSITE profilePS500719.685170193IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-8170199IPR009057Homeodomain-like
SuperFamilySSF466891.4E-7171202IPR009057Homeodomain-like
PfamPF021831.4E-15193232IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQHHHH HHHEHHLPPP HPQHNPFLPF  60
PQCPSLQDFR GGLSPMLGKR PAMYGGGDGG CGGGEVRTLE KNFEVANKLE PERKMQLARA  120
LGLQPRQVAI WFQNRRARWK TKQLEKDYDV LKRQFDAVKA ENDALLSHNK KLQSEPRQVA  180
IWFQNRRARW KTKQLEKDYD VLKRQFDAVK AENDALLSHN KKLQSEILGL KGCREAASEL  240
INLNKETEAS CSNRSENSSE INLDISRTPP SDGPMDAPPS HQQGGGGGGM IPFYPSVARP  300
AGVDIDHLLH ASVPKMEHHH GGPDTASFGN LLCGVDEPPP FWPWADHQQF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185193RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590410.0AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597470.0AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662450.0AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
GenBankAK3673180.0AK367318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054L16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.11e-158homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-103HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLM8B6J40.0M8B6J4_AEGTA; Homeobox-leucine zipper protein HOX21
STRINGEMT096060.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-58HD-ZIP family protein