PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09579
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 438aa    MW: 48077.3 Da    PI: 4.7426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09579genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-154289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l  +vk++G  +W+ + +  g+ R++k+c++rw ++l
         EMT09579 42 KGPWTPAEDAILEAYVKKHGVQNWNVVQKDTGLLRCGKSCRLRWANHL 89
                     79******************************99**********9986 PP
2Myb_DNA-binding21.65.1e-0795123130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      +g +T+eE+ l+++++ ++G++ W++ a++
         EMT09579  95 KGTFTKEEENLIIKLHSKMGNK-WARMAAR 123
                      799*******************.**99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.813793IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-213892IPR009057Homeodomain-like
SMARTSM007172.0E-134191IPR001005SANT/Myb domain
PfamPF002499.0E-144289IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-2343119IPR009057Homeodomain-like
CDDcd001671.00E-104489No hitNo description
PROSITE profilePS500906.44690123IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-1393123IPR009057Homeodomain-like
SMARTSM007170.2494135IPR001005SANT/Myb domain
PfamPF002494.2E-695123IPR001005SANT/Myb domain
CDDcd001670.0042797123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTRAKSESGR EMPGPDQADL ASRDDDSARE SPRRRAGPQL KKGPWTPAED AILEAYVKKH  60
GVQNWNVVQK DTGLLRCGKS CRLRWANHLR PDLKKGTFTK EEENLIIKLH SKMGNKWARM  120
AARTNVEHIV VSTATMTASN EEQHESTDFS FSEKLANDLL HGNGLYDPSS TWGDFIDDQE  180
ALSYAPQLPD VSLSNLPGLY FESKNYGFMD QVNQAEILKE SEISFPWLNA AINGTFDGSH  240
AFSNGNFSTS RPMTGSWKME LPSFQFAGSD PNNWSTYSRT CAAQGANFGD PCMRSSAAMA  300
SAKFEHMCMI PGNSGQLEEP LPEAHAVSSA ENQQLSVGSS SASTGSPCDA MVETSELHFL  360
ERDPNLYALV NSCSPASPLC QASPDELPCS DFSSAASPVF VSDEPTIPEY DKGFLLPHPE  420
DSRADAFSHW NAMPPIFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-19171212105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750520.0AK375052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181615.10.0transcription factor GAMYB-like isoform X1
RefseqXP_020181616.10.0transcription factor GAMYB-like isoform X1
RefseqXP_020181617.10.0transcription factor GAMYB-like isoform X1
SwissprotA2WW871e-119GAM1_ORYSI; Transcription factor GAMYB
TrEMBLM8BRZ10.0M8BRZ1_AEGTA; Transcription factor GAMYB
STRINGEMT095790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.28e-41myb domain protein 101