PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09575
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 175aa    MW: 18455.8 Da    PI: 10.0353
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09575genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-1987121135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C+ C+ttkTplWR gp+g+ +LCnaCG++yrkk++
  EMT09575  87 CTACNTTKTPLWRGGPSGPMSLCNACGIRYRKKRR 121
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.76E-1480120No hitNo description
PROSITE profilePS5011412.58581117IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-1681138IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-1582123IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.98E-1486136No hitNo description
PfamPF003202.6E-1787121IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSTMLHRHFV KPSSSLDHLG LGGWDLGQAE DYSGVGAQTP KDTAARETHQ TRDLPILAPD  60
MSSSVEKGNG SLDPGERPAA GSQPKACTAC NTTKTPLWRG GPSGPMSLCN ACGIRYRKKR  120
REAMGLEDPP QKRQTRGADA AQAAAGRGGE GGHPPHGPLL RRHLRLIQAG PAPPS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709091e-104AK370909.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8B7E91e-123M8B7E9_AEGTA; Uncharacterized protein
STRINGEMT095751e-124(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-18GATA transcription factor 15