PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09407
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 839aa    MW: 88420.3 Da    PI: 4.5114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09407genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053728753123
               EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
               ++C   +C+++F+ + +L  H ++ +
  EMT09407 728 FECDidYCHMTFKKRAELSIHKKNmC 753
               89*******************99866 PP
2zf-C2H212.60.0004753775323
               ET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
               C+   Cgk+F+++ +L+rH++ H
  EMT09407 753 CTikSCGKHFRSHKYLRRHQSIH 775
               77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035530728750IPR015880Zinc finger, C2H2-like
SMARTSM003550.46751775IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.424751780IPR007087Zinc finger, C2H2
PROSITE patternPS000280753775IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-7756781IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.79E-10767809No hitNo description
SMARTSM003555.7E-4781805IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214781810IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-10782805IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280783805IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-8797834No hitNo description
Gene3DG3DSA:3.30.160.608.0E-10806832IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540811833IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MGRASAFPCK KILRAISVAP GFDGGWVSQE EEGEEHFVLR GGHPHPHHTH WRRQTAPRQF  60
GRVTAATLAD AAVAPDGIKH KGHIADLEPE GELLKSDQDH RVRLPQRPPV LEAQECEVGH  120
EHSVIKGSVR PEAMEETTLV SEAATEPVVM EGAHVVDEAT AEQEVGVATP LVNGSVTDPE  180
VTGGASLVSG SITETEVMSG VSLANEAVGG REVSMGISLV SGSIAEPEVI SGASLADEAV  240
AETEVSGGLC LVSEAATEAA DVAIASEVTT GAPLDNKGVA EQDIKMGASP VDESASEAAT  300
EAADLVTTPG APLDNQGVAE PDIKMGASPV NECAAKTATE AAGVVAALRV TTVASFDNKG  360
VAEPDIKMEA SPANESAAEM DFVHSGSLVT EAATHPGLPE RVSLANGAAT EREASEAGSL  420
VSEPAAEAAD VVTALEVTTG APIDNEGTAE PEIKIGPSFA NESTAEMDSV LLGSLVTEAT  480
THPGLIGRVS LVTETGVTGG ANLDTEVSIE PEDTGRPSLI NESTELEITR GVSIATDAAS  540
EPEVTGQASA CSGDSDAALK EAETLDCDLD SANVQIEKAG ESVATEVQPS RDDRGDVGSV  600
NAMSTSPVTD KSLAFDEVIP QDDAPSVSCA SGVVVRSVGK SGRTDVICYA RRRGKRKLDM  660
EETKTDQLEM GDGDIYGQCE EKATFDITVP CESAMSTAES ADIKLADIKR GLVDNSASSK  720
GKKRKGRFEC DIDYCHMTFK KRAELSIHKK NMCTIKSCGK HFRSHKYLRR HQSIHNEEAP  780
YKCPWEGCSM SFKWTWALAD HFQVHTGEKP YKCRTPGCSK IYKYVSDFTR HRMRCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4072883423129Lysine-specific demethylase REF6
6a58_A1e-4072883423129Lysine-specific demethylase REF6
6a59_A1e-4072883423129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1650656RRRGKRK
2650657RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197869.10.0uncharacterized protein LOC109783681 isoform X2
TrEMBLM8AY530.0M8AY53_AEGTA; Metal regulatory transcription factor 1
STRINGEMT094070.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-38C2H2 family protein