PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT09295

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 629aa MW: 72208 Da PI: 9.431

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09295	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.1	9e-16	48	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk GF v +++++k k+++e + +++C+k ++++ k + + er++ +++C + k++ + ++w+vt+ eHnHel EMT09295 48 EFYQTYAKFHGFAVNTEYHRKIKKTNEYSRGEMRCYKARRNKKGKGDapVVPERKRGIIVKMECPVRCKLNVD-GAQWVVTEYFDEHNHELI 138 6************************************9999998888899*********99999999.99************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-12	48	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-21	263	344	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MEIVPAIPTS THVHTSTSNT RAGETAADTE VNDETDDEAQ GDEDDAKEFY QTYAKFHGFA 60 VNTEYHRKIK KTNEYSRGEM RCYKARRNKK GKGDAPVVPE RKRGIIVKME CPVRCKLNVD 120 GAQWVVTEYF DEHNHELIKK FDLVKFLTAH RGFTPLEKKF IKLLHDCNVG PSRMVQILSL 180 IHSKNGSLSS MPYLLADVTN LKAKYRRESK LADIEATIAY FDEKAKEDQD FFYRIRLDDE 240 DHVRNMYWVD GAARRAYKHF RDCISFDTTY LTNMYKMPCA PFIGINNHNQ SLQFGCGLIR 300 NEDTDGYVWL FKTFLEGTGG LVPMNIITDQ DFSMRAGIEE TTQRSEGFNA VLKRYMSPGN 360 SLLQFAKQYT ALQQKILGSE LQQEANTALK QPKLLTYLPM ERQMSKIYTN TIFNKFQEEI 420 KRASMYTAFQ VDEHTFKRRR ILLPMLQIRT GRDCVLSHSK SNGLERGDTM PRHFIRRRWT 480 WDAEDALAPQ TSNAVLAVHD ERPESTMEAV RHVVLTKNYV ELIDEACKSD ETARVAEKHR 540 KALKRELDEI KKRKAEEALH RFPRTSSVPS STGPSSENSE VGSGTASTQT QVRNPPRSIT 600 KGRPKEIRYK SGLEIQAKHK KPKKGTGNP

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MEIVPAIPTS THVHTSTSNT RAGETAADTE VNDETDDEAQ GDEDDAKEFY QTYAKFHGFA  60
VNTEYHRKIK KTNEYSRGEM RCYKARRNKK GKGDAPVVPE RKRGIIVKME CPVRCKLNVD  120
GAQWVVTEYF DEHNHELIKK FDLVKFLTAH RGFTPLEKKF IKLLHDCNVG PSRMVQILSL  180
IHSKNGSLSS MPYLLADVTN LKAKYRRESK LADIEATIAY FDEKAKEDQD FFYRIRLDDE  240
DHVRNMYWVD GAARRAYKHF RDCISFDTTY LTNMYKMPCA PFIGINNHNQ SLQFGCGLIR  300
NEDTDGYVWL FKTFLEGTGG LVPMNIITDQ DFSMRAGIEE TTQRSEGFNA VLKRYMSPGN  360
SLLQFAKQYT ALQQKILGSE LQQEANTALK QPKLLTYLPM ERQMSKIYTN TIFNKFQEEI  420
KRASMYTAFQ VDEHTFKRRR ILLPMLQIRT GRDCVLSHSK SNGLERGDTM PRHFIRRRWT  480
WDAEDALAPQ TSNAVLAVHD ERPESTMEAV RHVVLTKNYV ELIDEACKSD ETARVAEKHR  540
KALKRELDEI KKRKAEEALH RFPRTSSVPS STGPSSENSE VGSGTASTQT QVRNPPRSIT  600
KGRPKEIRYK SGLEIQAKHK KPKKGTGNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	436	440	KRRRI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175678.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M8B6R9	0.0	M8B6R9_AEGTA; Uncharacterized protein
STRING	EMT09295	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-42	FAR1-related sequence 5